<=>End overlap alignment

Alignment #1 HSP: 1999 bps / non-identical: 250 bps

Full alignment

CR381696.5	1	GATCACAAGGTCAAGAGATCAAGACCATCCCGGCCAACATGGTGAAACCC	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35324	GATCACAAGGTCAAGAGATCAAGACCATCCCGGCCAACATGGTGAAACCC	35373

CR381696.5	51	CACCTCTATTAAAAATATAAAAATTAGCTGGGTGTGGTGAGACATGCCTA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35374	CACCTCTATTAAAAATATAAAAATTAGCTGGGTGTGGTGAGACATGCCTA	35423

CR381696.5	101	TAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35424	TAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCTTGAACCCGGG	35473

CR381696.5	151	AGGCAGGTGTTGCAGTGAGCCAAAATCATGCCACTACACTCCAGCCTGGG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35474	AGGCAGGTGTTGCAGTGAGCCAAAATCATGCCACTACACTCCAGCCTGGG	35523

CR381696.5	201	CAACAGAGCATCTCAGGGGAAAAAAAAAAAAAAA-GGGAACAAAAAAAGA	249
			|||||||||||||||||||||||||||||||||| |||||||||||||||
CR856018.10	35524	CAACAGAGCATCTCAGGGGAAAAAAAAAAAAAAAAGGGAACAAAAAAAGA	35573

CR381696.5	250	AATCCGCACCTGTACTCTTTAAATTTATAATAAATAAGCAAATCAATAAA	299
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35574	AATCCGCACCTGTACTCTTTAAATTTATAATAAATAAGCAAATCAATAAA	35623

CR381696.5	300	TACATAAGCCAGGACGGGTGCGGTGGCTCACACCTGTCATCCCAGCACTT	349
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35624	TACATAAGCCAGGACGGGTGCGGTGGCTCACACCTGTCATCCCAGCACTT	35673

CR381696.5	350	TGGGAGACCGAGGCGGGCGGATCACGAGGTCAAGAGATCAAGACCATCCC	399
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35674	TGGGAGACCGAGGCGGGCGGATCACGAGGTCAAGAGATCAAGACCATCCC	35723

CR381696.5	400	GGCCAACATGGTGAAACCCCATCTCTATTAAAAATATAAAAATTAGCTGG	449
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35724	GGCCAACATGGTGAAACCCCATCTCTATTAAAAATATAAAAATTAGCTGG	35773

CR381696.5	450	GTGTGGTGGGACATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGG	499
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35774	GTGTGGTGGGACATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGG	35823

CR381696.5	500	AGAATCGCTTGAACCTGGGACGCAGGGGTTGCAGTGAGCCGAGATCGCGC	549
			||||||||||||||||||||||||||||||||||||||| ||||||||||
CR856018.10	35824	AGAATCGCTTGAACCTGGGACGCAGGGGTTGCAGTGAGCTGAGATCGCGC	35873

CR381696.5	550	CATTGTACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAGAAAAA	599
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35874	CATTGTACTCCAGCCTGGGTGACAGGGTGAGACTCCGTCTCAAAGAAAAA	35923

CR381696.5	600	AAATAAATAAATAAAATAAATAAATCCGCACCTGTACTCCTTAAATTTAT	649
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35924	AAATAAATAAATAAAATAAATAAATCCGCACCTGTACTCCTTAAATTTAT	35973

CR381696.5	650	AATAAATAAGTGAATCGATAAATACATAAGCCAATTGGTGAGATGACCCA	699
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	35974	AATAAATAAGTGAATCGATAAATACATAAGCCAATTGGTGAGATGACCCA	36023

CR381696.5	700	TAAAGACAAACAAAGCTTTGTGAGGGGAAAGCAAGCGCCCAGGAGAAGCC	749
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36024	TAAAGACAAACAAAGCTTTGTGAGGGGAAAGCAAGCGCCCAGGAGAAGCC	36073

CR381696.5	750	CTGTCTTCGGAGGTTTTGGCGCAGGCCTGAATGAAGGGAAGGAGAGGGAT	799
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36074	CTGTCTTCGGAGGTTTTGGCGCAGGCCTGAATGAAGGGAAGGAGAGGGAT	36123

CR381696.5	800	TGGATACCTGGGGGAAGGGCGTGCGTGGAGGAGGAAACAGCCAGGGCTGA	849
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36124	TGGATACCTGGGGGAAGGGCGTGCGTGGAGGAGGAAACAGCCAGGGCTGA	36173

CR381696.5	850	GGCCTGCACATTGCAGGGAAAGGGTGAAGTCCCTGGTGGCTCTACCTGGA	899
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36174	GGCCTGCACATTGCAGGGAAAGGGTGAAGTCCCTGGTGGCTCTACCTGGA	36223

CR381696.5	900	GCAATTTCTTCTTATTTTTTCTTTTTTTGAGATGGAGTTTCACTCTTGTC	949
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36224	GCAATTTCTTCTTATTTTTTCTTTTTTTGAGATGGAGTTTCACTCTTGTC	36273

CR381696.5	950	ACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCTGC	999
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36274	ACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCTGC	36323

CR381696.5	1000	TCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATT	1049
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36324	TCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATT	36373

CR381696.5	1050	ACAGGCGTCCGCCACCATGCCTGGCTAATTTCTGTATTTTTAGTAGAGAC	1099
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36374	ACAGGCGTCCGCCACCATGCCTGGCTAATTTCTGTATTTTTAGTAGAGAC	36423

CR381696.5	1100	GGGGTTTCACCACGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCATGTG	1149
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36424	GGGGTTTCACCACGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCATGTG	36473

CR381696.5	1150	ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCAC	1199
			|||||||||||||||||||||||||||||||||||||||| |||||||||
CR856018.10	36474	ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGTGTGAGCCAC	36523

CR381696.5	1200	TGCGCCCGGCCACCTGGAGCATTTTCAGTGGAGCATGGGGGACTGGAAGT	1249
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36524	TGCGCCCGGCCACCTGGAGCATTTTCAGTGGAGCATGGGGGACTGGAAGT	36573

CR381696.5	1250	GAATTGTATGAGCAATTCCTGTATGGGGATTTGCTGCAGCGGAGACTGTA	1299
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36574	GAATTGTATGAGCAATTCCTGTATGGGGATTTGCTGCAGCGGAGACTGTA	36623

CR381696.5	1300	GTCAGGGACAGTCCCCAGGGGAAATAGAAGGTCCAGAGAGGGTGGTTAGA	1349
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36624	GTCAGGGACAGTCCCCAGGGGAAATAGAAGGTCCAGAGAGGGTGGTTAGA	36673

CR381696.5	1350	TTTGTTTATTAATAAAAAAAAAAAAAGAAATGGGGGGGCTGGGTAGGGTG	1399
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36674	TTTGTTTATTAATAAAAAAAAAAAAAGAAATGGGGGGGCTGGGTAGGGTG	36723

CR381696.5	1400	TCTCATGCCTGTAATCCCAGCACTTCGGCAGGCCGAGGCAGGCGGCTCAC	1449
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36724	TCTCATGCCTGTAATCCCAGCACTTCGGCAGGCCGAGGCAGGCGGCTCAC	36773

CR381696.5	1450	TCGAGACTGTGAGTTCGAGATCAGCCTGAGTAACATATCGAAAACCCGTC	1499
			||||||||||||||||||||||||||||||||||||||||||| ||||||
CR856018.10	36774	TCGAGACTGTGAGTTCGAGATCAGCCTGAGTAACATATCGAAACCCCGTC	36823

CR381696.5	1500	TCTACTGAAAATGTAAAAATTAGCCAGGCGTGCTGGGAGGTAGCTGAGGT	1549
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36824	TCTACTGAAAATGTAAAAATTAGCCAGGCGTGCTGGGAGGTAGCTGAGGT	36873

CR381696.5	1550	CCCAGCTACCCAGGAGGATGAGGCCGAATTGCTTGAACCCAGGAGGCGGA	1599
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36874	CCCAGCTACCCAGGAGGATGAGGCCGAATTGCTTGAACCCAGGAGGCGGA	36923

CR381696.5	1600	GGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAGA	1649
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36924	GGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAGA	36973

CR381696.5	1650	GAGAGGTTCCATCTTAAAAAAAATAAAAATAAAAAAATTCCCAGTACCTG	1699
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	36974	GAGAGGTTCCATCTTAAAAAAAATAAAAATAAAAAAATTCCCAGTACCTG	37023

CR381696.5	1700	CATCCTTGACTTGATTAATTAACCTGTCACCCTCTCGGCACATCAATCCA	1749
			||||||||| ||||||||||||||||||||||||||||||||||||||||
CR856018.10	37024	CATCCTTGATTTGATTAATTAACCTGTCACCCTCTCGGCACATCAATCCA	37073

CR381696.5	1750	AGTTCCAATCAACCCTAAGACAGACTTTCATTAGACTGCATGGCGGATAC	1799
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	37074	AGTTCCAATCAACCCTAAGACAGACTTTCATTAGACTGCATGGCGGATAC	37123

CR381696.5	1800	AAATACATGCTTAAGACAAGCAATGATACGAGTGGTCTACTTCATGGTGA	1849
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	37124	AAATACATGCTTAAGACAAGCAATGATACGAGTGGTCTACTTCATGGTGA	37173

CR381696.5	1850	AGTGGGCGCAGTCTACACTGCAAATTTGTTCATTTTGATGGCAGGCCTGA	1899
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	37174	AGTGGGCGCAGTCTACACTGCAAATTTGTTCATTTTGATGGCAGGCCTGA	37223

CR381696.5	1900	TCACATGATTTCAAAGTGGTCAGGACTTGCTGGACATGAGCCCTGAATGG	1949
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	37224	TCACATGATTTCAAAGTGGTCAGGACTTGCTGGACATGAGCCCTGAATGG	37273

CR381696.5	1950	TGGAGCTGATACACTCAGCATTTACAATAGCTTTCTATTTTTTTTTTTTT	1999
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR856018.10	37274	TGGAGCTGATACACTCAGCATTTACAATAGCTTTCTATTTTTTTTTTTTT	37323

Compact alignment

skip 200 bps 100% identity alignment

CR381696.5	201	CAACAGAGCATCTCAGGGGAAAAAAAAAAAAAAA-GGGAACAAAAAAAGA	249
			|||||||||||||||||||||||||||||||||| |||||||||||||||
CR856018.10	35524	CAACAGAGCATCTCAGGGGAAAAAAAAAAAAAAAAGGGAACAAAAAAAGA	35573

skip 250 bps 100% identity alignment

CR381696.5	500	AGAATCGCTTGAACCTGGGACGCAGGGGTTGCAGTGAGCCGAGATCGCGC	549
			||||||||||||||||||||||||||||||||||||||| ||||||||||
CR856018.10	35824	AGAATCGCTTGAACCTGGGACGCAGGGGTTGCAGTGAGCTGAGATCGCGC	35873

skip 600 bps 100% identity alignment

CR381696.5	1150	ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCAC	1199
			|||||||||||||||||||||||||||||||||||||||| |||||||||
CR856018.10	36474	ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGTGTGAGCCAC	36523

skip 250 bps 100% identity alignment

CR381696.5	1450	TCGAGACTGTGAGTTCGAGATCAGCCTGAGTAACATATCGAAAACCCGTC	1499
			||||||||||||||||||||||||||||||||||||||||||| ||||||
CR856018.10	36774	TCGAGACTGTGAGTTCGAGATCAGCCTGAGTAACATATCGAAACCCCGTC	36823

skip 200 bps 100% identity alignment

CR381696.5	1700	CATCCTTGACTTGATTAATTAACCTGTCACCCTCTCGGCACATCAATCCA	1749
			||||||||| ||||||||||||||||||||||||||||||||||||||||
CR856018.10	37024	CATCCTTGATTTGATTAATTAACCTGTCACCCTCTCGGCACATCAATCCA	37073

skip 250 bps 100% identity alignment

Overview

Query
CR381696.5 - 39328 bps
Hit
CR856018.10 - 37323 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 1999 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.79990199911999135324373231
Short-link