<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

CR382339.9	1	GAATTCCAAGTGTAATAATTACACACACAAAGACTTGGAGATAAAAGCTT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	1995	GAATTCCAAGTGTAATAATTACACACACAAAGACTTGGAGATAAAAGCTT	2044

CR382339.9	51	CCAGTACACCAAGTACAAACATAGTGCAGACGTAAAGACAATAATAACAA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2045	CCAGTACACCAAGTACAAACATAGTGCAGACGTAAAGACAATAATAACAA	2094

CR382339.9	101	TAGTATTTAAAAAAGGAAAAAATAGCTAAAAATAAAATGTCCATAAACAG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2095	TAGTATTTAAAAAAGGAAAAAATAGCTAAAAATAAAATGTCCATAAACAG	2144

CR382339.9	151	AATTGTAAATGTTCCAATGTGCTATTTATGGAATCACAGAATTAAAACAA	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2145	AATTGTAAATGTTCCAATGTGCTATTTATGGAATCACAGAATTAAAACAA	2194

CR382339.9	201	ATCATTTACTGGGATTTTTATTTTTAGGTGAACTGTCACTTTTAATGCAT	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2195	ATCATTTACTGGGATTTTTATTTTTAGGTGAACTGTCACTTTTAATGCAT	2244

CR382339.9	251	GAATGCCTCATAAAGATTCATATATATATATATATATATATATATATATA	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2245	GAATGCCTCATAAAGATTCATATATATATATATATATATATATATATATA	2294

CR382339.9	301	TATATATATATATATATATATATATATATATATATATATATATATATATA	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2295	TATATATATATATATATATATATATATATATATATATATATATATATATA	2344

CR382339.9	351	TATATATATATATAAATTTTTTTTTTTTTTTTTTTGCTTATTGTCCCCTT	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2345	TATATATATATATAAATTTTTTTTTTTTTTTTTTTGCTTATTGTCCCCTT	2394

CR382339.9	401	CTTTCTAAACAACAGTGCATAAAATACCCTTCATTTCTCAAAGCAGAACA	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2395	CTTTCTAAACAACAGTGCATAAAATACCCTTCATTTCTCAAAGCAGAACA	2444

CR382339.9	451	GACTGATAAAATGTTTGGTCATACTTTATTTTAATGGTCCATTTGTTGAA	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2445	GACTGATAAAATGTTTGGTCATACTTTATTTTAATGGTCCATTTGTTGAA	2494

CR382339.9	501	TTTAAGTTACATTGCAACTTATTCTCATTAGATTAGAAGTAGACAGCTAG	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2495	TTTAAGTTACATTGCAACTTATTCTCATTAGATTAGAAGTAGACAGCTAG	2544

CR382339.9	551	GGACTTCCGGTATAGCAATGAAGGAGTAAGGTGCGTGGAAGAAGGGCTCC	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2545	GGACTTCCGGTATAGCAATGAAGGAGTAAGGTGCGTGGAAGAAGGGCTCC	2594

CR382339.9	601	CAATCTACTTTATTAAATTAAACCTGCTAAACGCTAAATATTTCCAGTTA	650
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2595	CAATCTACTTTATTAAATTAAACCTGCTAAACGCTAAATATTTCCAGTTA	2644

CR382339.9	651	CTGTTAATTGATTTGTTTAGAACATTATCGCCCAAAATATGAGTAATTCT	700
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2645	CTGTTAATTGATTTGTTTAGAACATTATCGCCCAAAATATGAGTAATTCT	2694

CR382339.9	701	AAGCCGAAGCAAGCTCATCCTTCAGCTCCACCGACAACGAGATCTACCAC	750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2695	AAGCCGAAGCAAGCTCATCCTTCAGCTCCACCGACAACGAGATCTACCAC	2744

CR382339.9	751	GAGCATCGCTAGCAAGTTAGCAACCATGGCCGCCGCCGCCTCCAGTGCTG	800
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2745	GAGCATCGCTAGCAAGTTAGCAACCATGGCCGCCGCCGCCTCCAGTGCTG	2794

CR382339.9	801	AAAAACAGGTCACGTCAGAAACTTTTGAATCCGTATCCATAGACCTGTTG	850
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2795	AAAAACAGGTCACGTCAGAAACTTTTGAATCCGTATCCATAGACCTGTTG	2844

CR382339.9	851	ATTTCTGAATTAACTAAACAGCGTGTTAGTATCAGGGAAGATTTCTCTGC	900
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2845	ATTTCTGAATTAACTAAACAGCGTGTTAGTATCAGGGAAGATTTCTCTGC	2894

CR382339.9	901	CTTGATTCAGGAATCTATCGGGCCTTTACAAAGCTCCGTGAATGCGTTAA	950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2895	CTTGATTCAGGAATCTATCGGGCCTTTACAAAGCTCCGTGAATGCGTTAA	2944

CR382339.9	951	GAGAATCGGTTGAAGGATTTCAGAGCCGCCTGACTGCGACGGAGTGCCTA	1000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2945	GAGAATCGGTTGAAGGATTTCAGAGCCGCCTGACTGCGACGGAGTGCCTA	2994

CR382339.9	1001	GCTGGGGAGAATTTTGAGAGGCTGACAGCAGCTGAAAATGCTATTAAAAC	1050
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	2995	GCTGGGGAGAATTTTGAGAGGCTGACAGCAGCTGAAAATGCTATTAAAAC	3044

CR382339.9	1051	TTTACAAACTCAGAACACATCTCTGCTTGATCGCATTGAGGATTTGGAAA	1100
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3045	TTTACAAACTCAGAACACATCTCTGCTTGATCGCATTGAGGATTTGGAAA	3094

CR382339.9	1101	ACAGATCTCGAAGAGCTAACTTGAGGATCGTGAACATTCCGGAAGGTAGC	1150
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3095	ACAGATCTCGAAGAGCTAACTTGAGGATCGTGAACATTCCGGAAGGTAGC	3144

CR382339.9	1151	GAAAACGGCAAAGACCCCGTTACTTTCGTTTCTGAGATGTTACTTGAGAT	1200
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3145	GAAAACGGCAAAGACCCCGTTACTTTCGTTTCTGAGATGTTACTTGAGAT	3194

CR382339.9	1201	GACGGGCACGGAGGTCTTCGACAACCCACCAACACTTGACAGAGCGCACC	1250
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3195	GACGGGCACGGAGGTCTTCGACAACCCACCAACACTTGACAGAGCGCACC	3244

CR382339.9	1251	GTTCACCCGGCCAAAAACCAGCGGACGGCCGTAAACCACGTCCATTTTTG	1300
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3245	GTTCACCCGGCCAAAAACCAGCGGACGGCCGTAAACCACGTCCATTTTTG	3294

CR382339.9	1301	GTGTGTTTTCATCGATTTCAGGAAAAGGAGCGGTTGCTGCGCTGGGCAAA	1350
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3295	GTGTGTTTTCATCGATTTCAGGAAAAGGAGCGGTTGCTGCGCTGGGCAAA	3344

CR382339.9	1351	ACGACACGAAATGAAATACAAGGGGAACATCATCAGAATCTACCAAGATC	1400
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3345	ACGACACGAAATGAAATACAAGGGGAACATCATCAGAATCTACCAAGATC	3394

CR382339.9	1401	TCAGCGCTACCCTGTCAAAGAAACGCTCCTCTTACAACGGCATCAAGCAA	1450
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3395	TCAGCGCTACCCTGTCAAAGAAACGCTCCTCTTACAACGGCATCAAGCAA	3444

CR382339.9	1451	TCACTCTACCAGAAGGGCATACGTTTTCAATTGCTTTACCCGGCTCGACT	1500
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3445	TCACTCTACCAGAAGGGCATACGTTTTCAATTGCTTTACCCGGCTCGACT	3494

CR382339.9	1501	GAGGGTGACTTTTAATGAAGAAACCTTAATATTCAATACACCGGATGAGG	1550
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3495	GAGGGTGACTTTTAATGAAGAAACCTTAATATTCAATACACCGGATGAGG	3544

CR382339.9	1551	CGAAACAGTTCTACGACCAACGTATAAATGTTTAGAACACTTTTTTTTCC	1600
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3545	CGAAACAGTTCTACGACCAACGTATAAATGTTTAGAACACTTTTTTTTCC	3594

CR382339.9	1601	CTTGTTTTCTTTTTCACTCAATCACAGCTTACTGAGTTGACTCTTTTGAA	1650
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3595	CTTGTTTTCTTTTTCACTCAATCACAGCTTACTGAGTTGACTCTTTTGAA	3644

CR382339.9	1651	TTTTTTTTTTTTTTTGCTTTTGCTTTTGCTCTAAACTAAACAGAAACTGA	1700
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3645	TTTTTTTTTTTTTTTGCTTTTGCTTTTGCTCTAAACTAAACAGAAACTGA	3694

CR382339.9	1701	TGCACTGATAACAGTGACTGCGTTGAGGAAAAAAAACATTATCCTTTATA	1750
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3695	TGCACTGATAACAGTGACTGCGTTGAGGAAAAAAAACATTATCCTTTATA	3744

CR382339.9	1751	TTGGCGTTTTGACATTTTAGAATGTTTAATTATGTTGGGTTGCCCTCTAG	1800
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3745	TTGGCGTTTTGACATTTTAGAATGTTTAATTATGTTGGGTTGCCCTCTAG	3794

CR382339.9	1801	AGGTTGAAACGGATATAAGTTAGATGGGAGATTACTGGGGGTTGGTTAAT	1850
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3795	AGGTTGAAACGGATATAAGTTAGATGGGAGATTACTGGGGGTTGGTTAAT	3844

CR382339.9	1851	GGGGGCCTGCAATTTGTCTCCGTTCTTGAGGCAAATATAGGTAAAGTTCA	1900
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3845	GGGGGCCTGCAATTTGTCTCCGTTCTTGAGGCAAATATAGGTAAAGTTCA	3894

CR382339.9	1901	GTGGGGTTGGGAGAATCACTGCCAAATATGTTTGTTTTTTCTCTTTTCTC	1950
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3895	GTGGGGTTGGGAGAATCACTGCCAAATATGTTTGTTTTTTCTCTTTTCTC	3944

CR382339.9	1951	CTTTTCCTTTTTTTTTTCTTTTTTTTTCTCCTTTTACCTGCTTGTCATGT	2000
			||||||||||||||||||||||||||||||||||||||||||||||||||
CR853301.6	3945	CTTTTCCTTTTTTTTTTCTTTTTTTTTCTCCTTTTACCTGCTTGTCATGT	3994

Overview

Query
CR382339.9 - 169923 bps
Hit
CR853301.6 - 3994 bps
Total alignments
14
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
110019522000120001199539941
289.41150258109859110116-11133671
381.6912432811483711516413777201
496.3649110262371-1225623651
594.93599148255148353-1226323601
694.7934971641471642431226323581
794.743096164149164244-1226423581
810035721043931044641226423351
910031641203281203911226423271
10100367434423344961226523381
1195.631921482571483481226523551
1297.473279104386104464-1228423621
1310037763442134496-1228523601
141003164120328120391-1229423571
Short-link