<=>End overlap alignment

Alignment #1 HSP: 1954 bps / non-identical: 100 bps

Full alignment

  BX897656.9	139887	TCAGTTCTTAATTTTTCTCCTTTCGTCTCACTTGTTTCTATATAACCAAA	139936
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18652	TCAGTTCTTAATTTTTCTCCTTTCGTCTCACTTGTTTCTATATAACCAAA	18603

  BX897656.9	139937	TCAGGACTCTTCTTGTCTCGTTTTCATCTCATCTTCATCTCCTTTTCTCT	139986
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18602	TCAGGACTCTTCTTGTCTCGTTTTCATCTCATCTTCATCTCCTTTTCTCT	18553

  BX897656.9	139987	GGTCTCCTTTTTGTCTCTCCTTCAGTCTCTCTCAGTTTATCTCTACTCTG	140036
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18552	GGTCTCCTTTTTGTCTCTCCTTCAGTCTCTCTCAGTTTATCTCTACTCTG	18503

  BX897656.9	140037	CTCTCCATATATTTTGATTTCAGGTTTGTCACCTTTTGCGTTGTCTCATT	140086
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18502	CTCTCCATATATTTTGATTTCAGGTTTGTCACCTTTTGCGTTGTCTCATT	18453

  BX897656.9	140087	TTAACTCAGTTTCTTCTCAAATCTCCATGTTTTTTTTTTCCTCTCGCCTG	140136
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18452	TTAACTCAGTTTCTTCTCAAATCTCCATGTTTTTTTTTTCCTCTCGCCTG	18403

  BX897656.9	140137	TTTCTATATAATCAAATCAGGACTCGTCTCGTCTTCATCTCCTTTTCTCT	140186
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18402	TTTCTATATAATCAAATCAGGACTCGTCTCGTCTTCATCTCCTTTTCTCT	18353

  BX897656.9	140187	AGTTTTTTTTGTCTCTCCTTTAGTCTCTCCGTTCGTCTCTGCTCTGCTCT	140236
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18352	AGTTTTTTTTGTCTCTCCTTTAGTCTCTCCGTTCGTCTCTGCTCTGCTCT	18303

  BX897656.9	140237	CCATATATTTTGATTTCGTGTTTGTTGACTTTTGCATTGTCTCATTTGAA	140286
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18302	CCATATATTTTGATTTCGTGTTTGTTGACTTTTGCATTGTCTCATTTGAA	18253

  BX897656.9	140287	CTTAGTTTCTTCTCAATTCTCCATGTTTCTCCATTCGTCACGCCTGTTTC	140336
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18252	CTTAGTTTCTTCTCAATTCTCCATGTTTCTCCATTCGTCACGCCTGTTTC	18203

  BX897656.9	140337	TATATAATCAAATCAGGACTCATCTCGTCTTCATATCCTTTTCTCTGGTC	140386
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18202	TATATAATCAAATCAGGACTCATCTCGTCTTCATATCCTTTTCTCTGGTC	18153

  BX897656.9	140387	TCTTTTTTTGTCTCTCCCTCTGTCTCTTTCATTTCCTGCACTTTCTTATC	140436
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18152	TCTTTTTTTGTCTCTCCCTCTGTCTCTTTCATTTCCTGCACTTTCTTATC	18103

  BX897656.9	140437	TATTTTTTCTCACGTTTTCTCGCTTTGTCTCATCGCATCCTCTAGACTTC	140486
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18102	TATTTTTTCTCACGTTTTCTCGCTTTGTCTCATCGCATCCTCTAGACTTC	18053

  BX897656.9	140487	CATATCTCTTTTTTCTGATCACCCTTTTTCTTTTATTAATTTGGTCTTGT	140536
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18052	CATATCTCTTTTTTCTGATCACCCTTTTTCTTTTATTAATTTGGTCTTGT	18003

  BX897656.9	140537	TAGTTTCTGCTCCTTTTATCTCCATATATTTTGATTTTGTGTTTGTCGTC	140586
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	18002	TAGTTTCTGCTCCTTTTATCTCCATATATTTTGATTTTGTGTTTGTCGTC	17953

  BX897656.9	140587	TGTTGCGTTGTCTCATTTTAACTCAGTTTCTTCTCAGTTCTTCATGTTTC	140636
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17952	TGTTGCGTTGTCTCATTTTAACTCAGTTTCTTCTCAGTTCTTCATGTTTC	17903

  BX897656.9	140637	TCCTTTCGTCTCGTCTGTTACTATATAATCAAATCAGGACTCGTCTCGTC	140686
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17902	TCCTTTCGTCTCGTCTGTTACTATATAATCAAATCAGGACTCGTCTCGTC	17853

  BX897656.9	140687	TTCATCTCCTTTTCTCCGGTCTCTTTTTTTGTCTCTCCTTCAGTCTCTTT	140736
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17852	TTCATCTCCTTTTCTCCGGTCTCTTTTTTTGTCTCTCCTTCAGTCTCTTT	17803

  BX897656.9	140737	CATCTCCTGCTCTTTTCTATCTCTTCTGTTTTCTTTTGTCTCATGTTTTC	140786
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17802	CATCTCCTGCTCTTTTCTATCTCTTCTGTTTTCTTTTGTCTCATGTTTTC	17753

  BX897656.9	140787	TCACCTTGGCTCATCGCATCCACCAGAACTCTATATCTGTTCTGTTTTTT	140836
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17752	TCACCTTGGCTCATCGCATCCACCAGAACTCTATATCTGTTCTGTTTTTT	17703

  BX897656.9	140837	CTATTAGTTTTTTCTGTATTTGTTTGCGCTAGTTCGTCTTCTCCATTTAT	140886
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17702	CTATTAGTTTTTTCTGTATTTGTTTGCGCTAGTTCGTCTTCTCCATTTAT	17653

  BX897656.9	140887	CTCCATATATTTTGATTTCGGGTTTGTCGACTTTTGCGTTCTCATTTTAA	140936
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17652	CTCCATATATTTTGATTTCGGGTTTGTCGACTTTTGCGTTCTCATTTTAA	17603

  BX897656.9	140937	CTCAGTTCCATGTTTCTCCTTTCGTCTTGCCTGTTTCTATATAATTAAAT	140986
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17602	CTCAGTTCCATGTTTCTCCTTTCGTCTTGCCTGTTTCTATATAATTAAAT	17553

  BX897656.9	140987	CAGGCTTCTTCTCGTCTTCATCTCCTTTACTCTGGTCTCTTTTTTGTCTC	141036
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17552	CAGGCTTCTTCTCGTCTTCATCTCCTTTACTCTGGTCTCTTTTTTGTCTC	17503

  BX897656.9	141037	TCCTTCAGTCTCTTTTTCTTTTCACCTTTCACCCTTTTTCTTTTATTAAT	141086
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17502	TCCTTCAGTCTCTTTTTCTTTTCACCTTTCACCCTTTTTCTTTTATTAAT	17453

  BX897656.9	141087	TTTGTCTTGTTAGTTTCTGCTCCTTTTATTTCCATATATTTTGATTTTGG	141136
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17452	TTTGTCTTGTTAGTTTCTGCTCCTTTTATTTCCATATATTTTGATTTTGG	17403

  BX897656.9	141137	GTTTGTCGTCTTTTGCGTTGTCTCATTTTAACTCAGTTTCTTCTCAGTTC	141186
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17402	GTTTGTCGTCTTTTGCGTTGTCTCATTTTAACTCAGTTTCTTCTCAGTTC	17353

  BX897656.9	141187	TCCGTGTTTCTCCTTTCCTCTCGCCTGTTTCTATATAATCAAATCAGGAC	141236
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17352	TCCGTGTTTCTCCTTTCCTCTCGCCTGTTTCTATATAATCAAATCAGGAC	17303

  BX897656.9	141237	TTTGCTTGTCTCATCTTCATATCCTTTTCTCTGGTCTCCTTTTCGTCTCA	141286
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17302	TTTGCTTGTCTCATCTTCATATCCTTTTCTCTGGTCTCCTTTTCGTCTCA	17253

  BX897656.9	141287	CCTTCAGTCTTTCTTTTCTATCACTTCTGTTTTCTTTCGTCTCATGTTTT	141336
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17252	CCTTCAGTCTTTCTTTTCTATCACTTCTGTTTTCTTTCGTCTCATGTTTT	17203

  BX897656.9	141337	CTCGCCTTGTCTCATCGCGTCCCCCAGACTTCCATATCTCTTCTTTTTTG	141386
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17202	CTCGCCTTGTCTCATCGCGTCCCCCAGACTTCCATATCTCTTCTTTTTTG	17153

  BX897656.9	141387	ATCACCTTTTTTTCTTATATTCATTTGGTCTTGTTAGTCTCATTATATAT	141436
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17152	ATCACCTTTTTTTCTTATATTCATTTGGTCTTGTTAGTCTCATTATATAT	17103

  BX897656.9	141437	ATATATATATATATATA---------------------------------	141453
			|||||||||||||||||                                 
C  BX927259.8	17102	ATATATATATATATATATATATATATATATATATATATATATATATATAT	17053

  BX897656.9	141454	-------------AAATATTTAGATTTTGCATATGTCGTCTATTGCGTTG	141490
			             |||||||||||||||||||||||||||||||||||||
C  BX927259.8	17052	ATATATATATATAAAATATTTAGATTTTGCATATGTCGTCTATTGCGTTG	17003

  BX897656.9	141491	TCTCAGTTCCTTCTCAGTTCTCCAGTTTTCTCCTTTCGTCTCGCCTGTTT	141540
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	17002	TCTCAGTTCCTTCTCAGTTCTCCAGTTTTCTCCTTTCGTCTCGCCTGTTT	16953

  BX897656.9	141541	CTATATCATCATATCAGGACGTCAGATATAAACTCAGTACCACTTTTTCC	141590
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16952	CTATATCATCATATCAGGACGTCAGATATAAACTCAGTACCACTTTTTCC	16903

  BX897656.9	141591	ACATCACTCAGTTTTTTCCTAACCTTTTTATATACTCGAAACTGACAGCC	141640
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16902	ACATCACTCAGTTTTTTCCTAACCTTTTTATATACTCGAAACTGACAGCC	16853

  BX897656.9	141641	ATATTTAACAGTGATATCACATCACAAAACAGCTCTACACGATTTTCTAC	141690
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16852	ATATTTAACAGTGATATCACATCACAAAACAGCTCTACACGATTTTCTAC	16803

  BX897656.9	141691	ATGAAGAAGCTATTACATCTATGTGTTCCCTATTATATATTTCTAAAGCA	141740
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16802	ATGAAGAAGCTATTACATCTATGTGTTCCCTATTATATATTTCTAAAGCA	16753

  BX897656.9	141741	TCGTGACTGTTTACATGAAATTTGAACAAAATGCTTCGACACATTTATTT	141790
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16752	TCGTGACTGTTTACATGAAATTTGAACAAAATGCTTCGACACATTTATTT	16703

  BX897656.9	141791	ATTTATTTTTTTTGTTCAGCACTTAATCCATCTTATAATAGTGTGAATTC	141840
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  BX927259.8	16702	ATTTATTTTTTTTGTTCAGCACTTAATCCATCTTATAATAGTGTGAATTC	16653

Compact alignment

skip 1550 bps 100% identity alignment

  BX897656.9	141437	ATATATATATATATATA---------------------------------	141453
			|||||||||||||||||                                 
C  BX927259.8	17102	ATATATATATATATATATATATATATATATATATATATATATATATATAT	17053

  BX897656.9	141454	-------------AAATATTTAGATTTTGCATATGTCGTCTATTGCGTTG	141490
			             |||||||||||||||||||||||||||||||||||||
C  BX927259.8	17052	ATATATATATATAAAATATTTAGATTTTGCATATGTCGTCTATTGCGTTG	17003

skip 350 bps 100% identity alignment

Overview

Query
BX897656.9 - 141840 bps
Hit
BX927259.8 - 18652 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 1954 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
11000195413988714184011665318652-1
Short-link