<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 600 bps

Full alignment

FO538754.3	1	GTAGCATGCTAAGTCATCTGCATGGAGGATGCATTGTGCGGTCATGGGGG	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36095	GTAGCATGCTAAGTCATCTGCATGGAGGATGCATTGTGCGGTCATGGGGG	36144

FO538754.3	51	TGTAGAGTGAATGTGGGGAGTGGGAAGATTTCAGGCAGCTGCTGTGAATA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36145	TGTAGAGTGAATGTGGGGAGTGGGAAGATTTCAGGCAGCTGCTGTGAATA	36194

FO538754.3	101	CCAACTGATCTCTTACCGGCCCCTCTTTCTAAAAAGGGGGTCAGGACAAG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36195	CCAACTGATCTCTTACCGGCCCCTCTTTCTAAAAAGGGGGTCAGGACAAG	36244

FO538754.3	151	ACTCTACCTCGAAAGGTAGAGCAGGGCCTGTCTGTGCCCATCACCAACAG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36245	ACTCTACCTCGAAAGGTAGAGCAGGGCCTGTCTGTGCCCATCACCAACAG	36294

FO538754.3	201	GTGTTCCGAGATTTCAGGTCAATGCCAGGCACGGTGGCTCCCTCCTGTAA	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36295	GTGTTCCGAGATTTCAGGTCAATGCCAGGCACGGTGGCTCCCTCCTGTAA	36344

FO538754.3	251	TCTCAGCGCTTTGGGAGGCTGTGATGGGGGGATTGCTCGAGGCCAGAAGT	300
			|||||||||||||||||||||||||||||| |||||||||||||||||||
BX901949.9	36345	TCTCAGCGCTTTGGGAGGCTGTGATGGGGGTATTGCTCGAGGCCAGAAGT	36394

FO538754.3	301	TTGAGACCAGCCTGGGAAACATAGCAAGGCCTCACCTCCGAAAAAGAAAT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36395	TTGAGACCAGCCTGGGAAACATAGCAAGGCCTCACCTCCGAAAAAGAAAT	36444

FO538754.3	351	GTAAAATTAGGTGGCTGGGGTGGTGCCCATCTGCAGTCCCAGCTACTCTG	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36445	GTAAAATTAGGTGGCTGGGGTGGTGCCCATCTGCAGTCCCAGCTACTCTG	36494

FO538754.3	401	GAGGCTGAGGCGGGGGGTATTACTTCAGCCCAGGAGGTTGAGGCTGCAGT	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36495	GAGGCTGAGGCGGGGGGTATTACTTCAGCCCAGGAGGTTGAGGCTGCAGT	36544

FO538754.3	451	GAGCTGAGATCACACCACTGCACTCCAGCCTGGGCCACATAGCAAGACAA	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36545	GAGCTGAGATCACACCACTGCACTCCAGCCTGGGCCACATAGCAAGACAA	36594

FO538754.3	501	GAAAAAGAAAGGAAGAAAGAAAAGAAAGAAGGAAAGAGGAAAGGAGGAGA	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36595	GAAAAAGAAAGGAAGAAAGAAAAGAAAGAAGGAAAGAGGAAAGGAGGAGA	36644

FO538754.3	551	GGAAGAGAGAAAGAGAGAGAGAAAGGAAGGAGAGAGAGAGAGAGAAAGAA	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36645	GGAAGAGAGAAAGAGAGAGAGAAAGGAAGGAGAGAGAGAGAGAGAAAGAA	36694

FO538754.3	601	AGAAACAAAGAATTAAAGAAAGAAAGAGAATGAAAGAGAGAAAGAAAAAA	650
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36695	AGAAACAAAGAATTAAAGAAAGAAAGAGAATGAAAGAGAGAAAGAAAAAA	36744

FO538754.3	651	GAGAGAAAGAGAGAAAGGAAGAAAAAGAAAGAGA-AAAA-GAAAGAGAAA	698
			|||||||||||||||||||||||||||||||||| |||| ||||||||||
BX901949.9	36745	GAGAGAAAGAGAGAAAGGAAGAAAAAGAAAGAGAGAAAAAGAAAGAGAAA	36794

FO538754.3	699	GAAAGAAAAGAGAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAAGAAAGAA	748
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36795	GAAAGAAAAGAGAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAAGAAAGAA	36844

FO538754.3	749	AGAAAGAAGGAAGGAAAAGAAAAGAAAAGGAAGGAAGGAAGGAAGGGCTG	798
			||||||||||||||||||||||||    | ||||||||||||||||||||
BX901949.9	36845	AGAAAGAAGGAAGGAAAAGAAAAG----G-AAGGAAGGAAGGAAGGGCTG	36889

FO538754.3	799	GGCGTGGTGGCTTACACCTGTAATGCCAGCATTTTGGGAGGCCGAGGTGG	848
			|||||||||||||||||||||||||||||||||| |||||||||||||||
BX901949.9	36890	GGCGTGGTGGCTTACACCTGTAATGCCAGCATTTCGGGAGGCCGAGGTGG	36939

FO538754.3	849	GTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAA	898
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36940	GTGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAA	36989

FO538754.3	899	CTCCATCTCTACTAAAAATACAAACATTAGCCGGACGTGGTGGCAGGTGC	948
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	36990	CTCCATCTCTACTAAAAATACAAACATTAGCCGGACGTGGTGGCAGGTGC	37039

FO538754.3	949	CTGTAATTCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCC	998
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37040	CTGTAATTCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCC	37089

FO538754.3	999	AGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCGTTGCACTCCAGCCT	1048
			||||||||||||||||||||||||||||||||||| ||||||||||||||
BX901949.9	37090	AGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCT	37139

FO538754.3	1049	GGGGGACACAGGGAGACTCCGTCTCGAAATAAATAAATAAATAAAAATAA	1098
			||| ||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37140	GGGAGACACAGGGAGACTCCGTCTCGAAATAAATAAATAAATAAAAATAA	37189

FO538754.3	1099	AATAAAAGATCAAATAAAATAAATAAAAACTGACCCCATTGACACACAGG	1148
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37190	AATAAAAGATCAAATAAAATAAATAAAAACTGACCCCATTGACACACAGG	37239

FO538754.3	1149	TACCATCACTGCAGACCCAGCCACGATGCAAAGGATATTTCCCAGTGTTT	1198
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37240	TACCATCACTGCAGACCCAGCCACGATGCAAAGGATATTTCCCAGTGTTT	37289

FO538754.3	1199	CCTTTTTGGGACATAAGTATGTAACTGTAGAAATTGATAGTAGGGCCGGG	1248
			||||||||||||||||||||||||||||||||||| ||||||||||||||
BX901949.9	37290	CCTTTTTGGGACATAAGTATGTAACTGTAGAAATTCATAGTAGGGCCGGG	37339

FO538754.3	1249	CGCCATGACTCACGCCTCTAATCCCACCACCTTGGGAGGCCAGAGGAGGG	1298
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37340	CGCCATGACTCACGCCTCTAATCCCACCACCTTGGGAGGCCAGAGGAGGG	37389

FO538754.3	1299	AGGATCCCTTGAGCCCAGGAGCTTGAGACCAGCCTCGTCAACACAGCAAG	1348
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37390	AGGATCCCTTGAGCCCAGGAGCTTGAGACCAGCCTCGTCAACACAGCAAG	37439

FO538754.3	1349	ATCCTGTGTCTACAAAAAATGAAAACATTATTCAGATGTGGTGGCGTGCA	1398
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37440	ATCCTGTGTCTACAAAAAATGAAAACATTATTCAGATGTGGTGGCGTGCA	37489

FO538754.3	1399	CCTGTAGTCCCAGCTACTTTGAAGGCTGACGCAAAAGAACGTTTCGAACC	1448
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37490	CCTGTAGTCCCAGCTACTTTGAAGGCTGACGCAAAAGAACGTTTCGAACC	37539

FO538754.3	1449	CACGAGGCGGAGTTTGCAGTGAGCCCAGATGGTGCCCCTGCACTCCAGCC	1498
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37540	CACGAGGCGGAGTTTGCAGTGAGCCCAGATGGTGCCCCTGCACTCCAGCC	37589

FO538754.3	1499	TGGGCAACAGAGTAAGACAAGAAAAAGAAAGGAAGAAAGAAGGAAAGAAA	1548
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37590	TGGGCAACAGAGTAAGACAAGAAAAAGAAAGGAAGAAAGAAGGAAAGAAA	37639

FO538754.3	1549	GAAGAAGGAAGGAAAGAAGGAAGGA-GG-G--AAGGGAGGGAGGGAGGGA	1594
			||||||||||||||||||||||||| || |  ||||||||||||||||||
BX901949.9	37640	GAAGAAGGAAGGAAAGAAGGAAGGAAGGAGGGAAGGGAGGGAGGGAGGGA	37689

FO538754.3	1595	GGGA----CGGAGGGACGGAGGGAGGGAAAGAAGAAAGGAAAGAGAGAGA	1640
			||||    ||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37690	GGGAGGGACGGAGGGACGGAGGGAGGGAAAGAAGAAAGGAAAGAGAGAGA	37739

FO538754.3	1641	GAAAGGAAGGAAGGAGATAGAGAGAAGGAAGGAAGAGAGGGAGGAAGGGA	1690
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37740	GAAAGGAAGGAAGGAGATAGAGAGAAGGAAGGAAGAGAGGGAGGAAGGGA	37789

FO538754.3	1691	GGAAGGGAGGGAGAGAGGGAAAGAAGAAAGGAAAGAAAGAGAGAGAGAGA	1740
			||  |  ||  |||| || |||||||||||||||||||||||||||||||
BX901949.9	37790	GG--G--AG--AGAG-GG-AAAGAAGAAAGGAAAGAAAGAGAGAGAGAGA	37831

FO538754.3	1741	GAAAGGAAGGAAGGAGATAAAGAAAGAGAGAAGGGAGGGAGGGAGGGAAG	1790
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37832	GAAAGGAAGGAAGGAGATAAAGAAAGAGAGAAGGGAGGGAGGGAGGGAAG	37881

FO538754.3	1791	CGAGAGAGGAGAAGAGGAGAGGAGAGGAGGAGAGGAGAGGAGAGGAGAG-	1839
			||||||||||||||||||| |||||||| |||||||||||||||||||  
BX901949.9	37882	CGAGAGAGGAGAAGAGGAGTGGAGAGGATGAGAGGAGAGGAGAGGAGAAC	37931

FO538754.3	1840	-GA---GAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAGA	1885
			 ||   ||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37932	AGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAGA	37981

FO538754.3	1886	AAAGAGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAG	1935
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37982	AAAGAGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAG	38031

FO538754.3	1936	GCTGAGGCGGTTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCC	1985
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	38032	GCTGAGGCGGTTGGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCC	38081

FO538754.3	1986	AACATGGGGAAACCC	2000
			|||||||||||||||
BX901949.9	38082	AACATGGGGAAACCC	38096

Compact alignment

skip 250 bps 100% identity alignment

FO538754.3	251	TCTCAGCGCTTTGGGAGGCTGTGATGGGGGGATTGCTCGAGGCCAGAAGT	300
			|||||||||||||||||||||||||||||| |||||||||||||||||||
BX901949.9	36345	TCTCAGCGCTTTGGGAGGCTGTGATGGGGGTATTGCTCGAGGCCAGAAGT	36394

skip 350 bps 100% identity alignment

FO538754.3	651	GAGAGAAAGAGAGAAAGGAAGAAAAAGAAAGAGA-AAAA-GAAAGAGAAA	698
			|||||||||||||||||||||||||||||||||| |||| ||||||||||
BX901949.9	36745	GAGAGAAAGAGAGAAAGGAAGAAAAAGAAAGAGAGAAAAAGAAAGAGAAA	36794

skip 50 bps 100% identity alignment

FO538754.3	749	AGAAAGAAGGAAGGAAAAGAAAAGAAAAGGAAGGAAGGAAGGAAGGGCTG	798
			||||||||||||||||||||||||    | ||||||||||||||||||||
BX901949.9	36845	AGAAAGAAGGAAGGAAAAGAAAAG----G-AAGGAAGGAAGGAAGGGCTG	36889

FO538754.3	799	GGCGTGGTGGCTTACACCTGTAATGCCAGCATTTTGGGAGGCCGAGGTGG	848
			|||||||||||||||||||||||||||||||||| |||||||||||||||
BX901949.9	36890	GGCGTGGTGGCTTACACCTGTAATGCCAGCATTTCGGGAGGCCGAGGTGG	36939

skip 150 bps 100% identity alignment

FO538754.3	999	AGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCGTTGCACTCCAGCCT	1048
			||||||||||||||||||||||||||||||||||| ||||||||||||||
BX901949.9	37090	AGGAGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCATTGCACTCCAGCCT	37139

FO538754.3	1049	GGGGGACACAGGGAGACTCCGTCTCGAAATAAATAAATAAATAAAAATAA	1098
			||| ||||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37140	GGGAGACACAGGGAGACTCCGTCTCGAAATAAATAAATAAATAAAAATAA	37189

skip 100 bps 100% identity alignment

FO538754.3	1199	CCTTTTTGGGACATAAGTATGTAACTGTAGAAATTGATAGTAGGGCCGGG	1248
			||||||||||||||||||||||||||||||||||| ||||||||||||||
BX901949.9	37290	CCTTTTTGGGACATAAGTATGTAACTGTAGAAATTCATAGTAGGGCCGGG	37339

skip 300 bps 100% identity alignment

FO538754.3	1549	GAAGAAGGAAGGAAAGAAGGAAGGA-GG-G--AAGGGAGGGAGGGAGGGA	1594
			||||||||||||||||||||||||| || |  ||||||||||||||||||
BX901949.9	37640	GAAGAAGGAAGGAAAGAAGGAAGGAAGGAGGGAAGGGAGGGAGGGAGGGA	37689

FO538754.3	1595	GGGA----CGGAGGGACGGAGGGAGGGAAAGAAGAAAGGAAAGAGAGAGA	1640
			||||    ||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37690	GGGAGGGACGGAGGGACGGAGGGAGGGAAAGAAGAAAGGAAAGAGAGAGA	37739

skip 50 bps 100% identity alignment

FO538754.3	1691	GGAAGGGAGGGAGAGAGGGAAAGAAGAAAGGAAAGAAAGAGAGAGAGAGA	1740
			||  |  ||  |||| || |||||||||||||||||||||||||||||||
BX901949.9	37790	GG--G--AG--AGAG-GG-AAAGAAGAAAGGAAAGAAAGAGAGAGAGAGA	37831

skip 50 bps 100% identity alignment

FO538754.3	1791	CGAGAGAGGAGAAGAGGAGAGGAGAGGAGGAGAGGAGAGGAGAGGAGAG-	1839
			||||||||||||||||||| |||||||| |||||||||||||||||||  
BX901949.9	37882	CGAGAGAGGAGAAGAGGAGTGGAGAGGATGAGAGGAGAGGAGAGGAGAAC	37931

FO538754.3	1840	-GA---GAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAGA	1885
			 ||   ||||||||||||||||||||||||||||||||||||||||||||
BX901949.9	37932	AGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAGA	37981

skip 115 bps 100% identity alignment

Overview

Query
FO538754.3 - 10214 bps
Hit
BX901949.9 - 38096 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.59740200012000136095380961
Short-link