<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

CR382323.8	1	ATGGCGCGCAGCGATTTCAGCCGCGGGTGACTCCAGAGGAGCAGACGGCG	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	126949	ATGGCGCGCAGCGATTTCAGCCGCGGGTGACTCCAGAGGAGCAGACGGCG	126998

CR382323.8	51	GGCGAGCTGAGACATGCGGCGAGAGCGCATACCCCCCATGCGGTTGATAT	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	126999	GGCGAGCTGAGACATGCGGCGAGAGCGCATACCCCCCATGCGGTTGATAT	127048

CR382323.8	101	ACGCCGCCGCCGCCGTACTGTCCGTCCTGACCAGCACGTGTTGCCGCTCC	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127049	ACGCCGCCGCCGCCGTACTGTCCGTCCTGACCAGCACGTGTTGCCGCTCC	127098

CR382323.8	151	AGCACCGGTAAAAAGCGGTGGAGAGCGAGGAACACTGCCAACAGCTCTAG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127099	AGCACCGGTAAAAAGCGGTGGAGAGCGAGGAACACTGCCAACAGCTCTAG	127148

CR382323.8	201	GCGATTGATATGCCAATGCAGCTGGGCACCCTTCCAGAGGCCCGCAGCCG	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127149	GCGATTGATATGCCAATGCAGCTGGGCACCCTTCCAGAGGCCCGCAGCCG	127198

CR382323.8	251	CATGCCCGCGACACACGGCCCCCCAACCCGTGTTGGAAGCGTCTGTTGAA	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127199	CATGCCCGCGACACACGGCCCCCCAACCCGTGTTGGAAGCGTCTGTTGAA	127248

CR382323.8	301	ACAACAACATGGCTGGACGCCTGTCCTAGAGGCACACCGGCCTGTAGGAA	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127249	ACAACAACATGGCTGGACGCCTGTCCTAGAGGCACACCGGCCTGTAGGAA	127298

CR382323.8	351	CGAGGGGTCGTTCCAAGGGCTGAGGGCGCGGCGACACAGCGCAGTAACCG	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127299	CGAGGGGTCGTTCCAAGGGCTGAGGGCGCGGCGACACAGCGCAGTAACCG	127348

CR382323.8	401	AGACCCGGTGTGTGCCCGCGTGCCATGCGCGTCTGGGGACCCGATCGTGA	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127349	AGACCCGGTGTGTGCCCGCGTGCCATGCGCGTCTGGGGACCCGATCGTGA	127398

CR382323.8	451	AGCCAGTGCTGAAGTGGTCTCATATGGAGCAACCCGAGCGGCGTGACGGC	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127399	AGCCAGTGCTGAAGTGGTCTCATATGGAGCAACCCGAGCGGCGTGACGGC	127448

CR382323.8	501	GGCTGCGGATGCCATATGCCCCAGGAGCCTCTGAAAGAACTTCAGTGGGA	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127449	GGCTGCGGATGCCATATGCCCCAGGAGCCTCTGAAAGAACTTCAGTGGGA	127498

CR382323.8	551	CCACTAGTTTGCTGTCGAGCTCCCTCAGACAGTTCAGCAACAGGCGAGCG	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127499	CCACTAGTTTGCTGTCGAGCTCCCTCAGACAGTTCAGCAACAGGCGAGCG	127548

CR382323.8	601	CGTTCCTCGGAGAGGTGCGCTACCATGGTGATCGAGTCCAGCTCCATCCC	650
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127549	CGTTCCTCGGAGAGGTGCGCTACCATGGTGATCGAGTCCAGCTCCATCCC	127598

CR382323.8	651	GAGAAAAGAAATCCTCTGCACGGGGGCGAGTTTGCTCTTTTCTCGGTTGA	700
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127599	GAGAAAAGAAATCCTCTGCACGGGGGCGAGTTTGCTCTTTTCTCGGTTGA	127648

CR382323.8	701	CCTGAAGCCCCAGTAGGCGGAGATGCCGAAGCACCTCGTCCCTGTGCATA	750
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127649	CCTGAAGCCCCAGTAGGCGGAGATGCCGAAGCACCTCGTCCCTGTGCATA	127698

CR382323.8	751	ACCAATTGCTCCCGCGAGTGGGCTAAAATCAGCCAGTCGTCGAGATAACT	800
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127699	ACCAATTGCTCCCGCGAGTGGGCTAAAATCAGCCAGTCGTCGAGATAACT	127748

CR382323.8	801	GAGTATGCGAATGCCCGCGAGCCGAAGGGGCGCTAGGGCACCCTCCGCGA	850
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127749	GAGTATGCGAATGCCCGCGAGCCGAAGGGGCGCTAGGGCACCCTCCGCGA	127798

CR382323.8	851	GTTTGGTGAAGACCCGCGGAGACAGAGAGAGCCCGAAGGGGAGGACCTTG	900
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127799	GTTTGGTGAAGACCCGCGGAGACAGAGAGAGCCCGAAGGGGAGGACCTTG	127848

CR382323.8	901	TACTGCCATGCTCGACCCTCGAACGCAAACCGCAGAAATTGGCGGTGGCG	950
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127849	TACTGCCATGCTCGACCCTCGAACGCAAACCGCAGAAATTGGCGGTGGCG	127898

CR382323.8	951	TGGAAGAATGGAGACATGGAAATACGCGTCCTTCAGGTCTATGGCTGCAA	1000
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127899	TGGAAGAATGGAGACATGGAAATACGCGTCCTTCAGGTCTATGGCTGCAA	127948

CR382323.8	1001	ACCAATCCCGAGGACGAACGCATTGGAGAATGCGCCTCTGCGTGAGCATT	1050
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127949	ACCAATCCCGAGGACGAACGCATTGGAGAATGCGCCTCTGCGTGAGCATT	127998

CR382323.8	1051	CTGAACGGCAGCTTGTGCAGACAGCGGTTCAAAACGCGCAGATCTAGGAT	1100
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	127999	CTGAACGGCAGCTTGTGCAGACAGCGGTTCAAAACGCGCAGATCTAGGAT	128048

CR382323.8	1101	TGGCCGTGACCCACCGCTCTTTTTGGGTACGATGAAGTATGGGCTGTAAA	1150
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128049	TGGCCGTGACCCACCGCTCTTTTTGGGTACGATGAAGTATGGGCTGTAAA	128098

CR382323.8	1151	ACCCACTCTCCATCTCGGCTGGAGGAACCGGCTCGATTGCACCCTTCGCC	1200
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128099	ACCCACTCTCCATCTCGGCTGGAGGAACCGGCTCGATTGCACCCTTCGCC	128148

CR382323.8	1201	AGGAGGGCAGCAATCTCCTCTCGCAAGACAGGGGCGGACAGGGGGTTGAC	1250
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128149	AGGAGGGCAGCAATCTCCTCTCGCAAGACAGGGGCGGACAGGGGGTTGAC	128198

CR382323.8	1251	CCTGGAGAAATACACGCCCGTAAACTTGGGGGGCCGTTTCGCGAACTGAA	1300
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128199	CCTGGAGAAATACACGCCCGTAAACTTGGGGGGCCGTTTCGCGAACTGAA	128248

CR382323.8	1301	TCGCGTAACCGAGTCTGATTGTGCGTATGAGCCACCGCGAGGGGCTGGCC	1350
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128249	TCGCGTAACCGAGTCTGATTGTGCGTATGAGCCACCGCGAGGGGCTGGCC	128298

CR382323.8	1351	CGCACTAACCAGGCAGGCAGAGCCCTCGCTAATGGAGTCATCGCTACAAT	1400
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128299	CGCACTAACCAGGCAGGCAGAGCCCTCGCTAATGGAGTCATCGCTACAAT	128348

CR382323.8	1401	CGCTGACGTACCAGCGGTGGGGCAGCGCGGAGTGGGTGTGCTGATCCGGG	1450
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128349	CGCTGACGTACCAGCGGTGGGGCAGCGCGGAGTGGGTGTGCTGATCCGGG	128398

CR382323.8	1451	AAGCACGAGGGTCCCGCGGAAAAGCTGGAGGAGAGCGATTCGCTCTGGCT	1500
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128399	AAGCACGAGGGTCCCGCGGAAAAGCTGGAGGAGAGCGATTCGCTCTGGCT	128448

CR382323.8	1501	CCGCACCCTGACTCCGGAGAGGGGGCTGGAGGGCTGAGGGAAGGGAGCCA	1550
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128449	CCGCACCCTGACTCCGGAGAGGGGGCTGGAGGGCTGAGGGAAGGGAGCCA	128498

CR382323.8	1551	CTGGCGAAGCACGTAGAGTCTGCGAGCCGGAAGGCAGCGCGTCCCGGACT	1600
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128499	CTGGCGAAGCACGTAGAGTCTGCGAGCCGGAAGGCAGCGCGTCCCGGACT	128548

CR382323.8	1601	GGCAGAACTCGTGCAGTCACATCCGGGGAAGGGAAAAAGTGCTCTTTTAC	1650
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128549	GGCAGAACTCGTGCAGTCACATCCGGGGAAGGGAAAAAGTGCTCTTTTAC	128598

CR382323.8	1651	TGATGTTTTGGTGGCACTGAAAAGTACCGTTGTTATCGGGGCCCCGCCCT	1700
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128599	TGATGTTTTGGTGGCACTGAAAAGTACCGTTGTTATCGGGGCCCCGCCCT	128648

CR382323.8	1701	CCAGCGGGGAAAGAGCAAGTTTCCTCTTCTCCGGATGGCCTGTCTCAGGG	1750
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128649	CCAGCGGGGAAAGAGCAAGTTTCCTCTTCTCCGGATGGCCTGTCTCAGGG	128698

CR382323.8	1751	ACGCTTCGCGGTCCGTTTACCGGACTTAACGGCGCCCTGGGCAGGAGGGG	1800
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128699	ACGCTTCGCGGTCCGTTTACCGGACTTAACGGCGCCCTGGGCAGGAGGGG	128748

CR382323.8	1801	CTGCCTGCTTTCGAGGTGAACGCCGCGCCCGCTTGGCCGGAGGCGCAGGC	1850
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128749	CTGCCTGCTTTCGAGGTGAACGCCGCGCCCGCTTGGCCGGAGGCGCAGGC	128798

CR382323.8	1851	GGGGGCAGCACTCGTTGGCGGGCGCCCTCGGCAAGGAACAGCGGAGGTGG	1900
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128799	GGGGGCAGCACTCGTTGGCGGGCGCCCTCGGCAAGGAACAGCGGAGGTGG	128848

CR382323.8	1901	ATGGCTCGGCGGGCGGAGCGGGCTTACGGCCACGCCGATAGATGACATTG	1950
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128849	ATGGCTCGGCGGGCGGAGCGGGCTTACGGCCACGCCGATAGATGACATTG	128898

CR382323.8	1951	CCCATCGCATCCGACTGCTCTTTCACCGCCTTGAATTCCTGGGTGAATTC	2000
			||||||||||||||||||||||||||||||||||||||||||||||||||
BX005029.13	128899	CCCATCGCATCCGACTGCTCTTTCACCGCCTTGAATTCCTGGGTGAATTC	128948

Overview

Query
CR382323.8 - 143411 bps
Hit
BX005029.13 - 128948 bps
Total alignments
21
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
1100195420001200011269491289481
282.024389979416595161-118466194551
388.74257458108256108713-127549280101
486.2119253115741115993127549278091
586.51220449115237115685127583280341
684.961322455777858022148250484951
789.121642492209722345-162534627811
889.01941826927669457169973701541
988.5996183108257108439169979701621
1092.6797147115243115389-170166703151
1184.14932055257652780177317775241
1284.01174438108263108700-184916853531
1381.89842526929869549-185091853441
1487.67264506108214108719-190281907831
1584.08177427115236115662190317907371
1683.521072686928269549-190471907371
1787.6531154810412610467311117651122991
1880.2389261130601130861-11187561190131
1991.75189287108432108718-11194151197051
2090.4715925311523611548811194541197051
2199.3815916234133574-11244881246491
Short-link