<=>End overlap alignment

Alignment #1 HSP: 591 bps / non-identical: 50 bps

Full alignment

KC877783.1	1	AGTGAAGGTTTATTGACATTGTGACAACATGGATAATACAGATTAAGTCA	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	119983	AGTGAAGGTTTATTGACATTGTGACAACATGGATAATACAGATTAAGTCA	120032

KC877783.1	51	GCAAACCATAAAGATTTTCCAGTGTGCCTAATGTCTAAAATTATAATTTA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120033	GCAAACCATAAAGATTTTCCAGTGTGCCTAATGTCTAAAATTATAATTTA	120082

KC877783.1	101	GTTATCATTTAGTAGTTCCATTAAATTATTTTCTATACAGGTAATCACGT	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120083	GTTATCATTTAGTAGTTCCATTAAATTATTTTCTATACAGGTAATCACGT	120132

KC877783.1	151	ATTTGATTTCTTTTCCAATATAGGCAATTTTAAACTCAGAGAGCTGGAAC	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120133	ATTTGATTTCTTTTCCAATATAGGCAATTTTAAACTCAGAGAGCTGGAAC	120182

KC877783.1	201	TAATAAAACCTAGGGAATGGAAATCTAAATTATAAACCATTCTTTTACAG	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120183	TAATAAAACCTAGGGAATGGAAATCTAAATTATAAACCATTCTTTTACAG	120232

KC877783.1	251	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGAC	300
			|||||||||||||||||||||||||||||||||||||||||||||||| |
AP000457.3	120233	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGGC	120282

KC877783.1	301	TATATAAAAATTATTTATAATTTGCAGGTATTAGTGGCTTAATACAGCAT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120283	TATATAAAAATTATTTATAATTTGCAGGTATTAGTGGCTTAATACAGCAT	120332

KC877783.1	351	ATATTTGCTATCAGCTTTTGCATTTTAAAAGAAAAATTAAAGACAAAAAT	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120333	ATATTTGCTATCAGCTTTTGCATTTTAAAAGAAAAATTAAAGACAAAAAT	120382

KC877783.1	401	CTTAATACAAAGTAATAAACTACTAATCATAAAATTCTCTCCTATATTCT	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120383	CTTAATACAAAGTAATAAACTACTAATCATAAAATTCTCTCCTATATTCT	120432

KC877783.1	451	TTTAGAACACAATGAAAGGAAATTATTTGCTTTTTATGAGAAACTGATAT	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120433	TTTAGAACACAATGAAAGGAAATTATTTGCTTTTTATGAGAAACTGATAT	120482

KC877783.1	501	ACTTTCTCTCCATAGATGATGAAAATAACTTTCTTTGACTACCAAGAAAT	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AP000457.3	120483	ACTTTCTCTCCATAGATGATGAAAATAACTTTCTTTGACTACCAAGAAAT	120532

KC877783.1	551	ATATAATCAAATTTGTAGACCACTTTTAATTTTTTAAAAAA	591
			|||||||||||||||||||||||||||||||||||||||||
AP000457.3	120533	ATATAATCAAATTTGTAGACCACTTTTAATTTTTTAAAAAA	120573

Compact alignment

skip 250 bps 100% identity alignment

KC877783.1	251	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGAC	300
			|||||||||||||||||||||||||||||||||||||||||||||||| |
AP000457.3	120233	ATTCCATGATTAACCTTTGAAAAAATTAAGCCCAACCTCCAAACACAGGC	120282

skip 291 bps 100% identity alignment

Overview

Query
KC877783.1 - 591 bps
Hit
AP000457.3 - 165221 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 591 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.83080591159111199831205731
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