<=>End overlap alignment

Alignment #1 HSP: 550 bps / non-identical: 50 bps

Full alignment

C  KC877791.1	550	GGGAGCTAGCAAGTTCGAAATCTACAGGGCAAGCTGGCAGGCTGGTAACT	501
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17179	GGGAGCTAGCAAGTTCGAAATCTACAGGGCAAGCTGGCAGGCTGGTAACT	17228

C  KC877791.1	500	CAGGCAAGAGTTGAAGTTATAGTCTTAAACCCAAAATCCACTGGCAAGAT	451
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17229	CAGGCAAGAGTTGAAGTTATAGTCTTAAACCCAAAATCCACTGGCAAGAT	17278

C  KC877791.1	450	TTTTATGTTATGGTTTTGAGGCAGAATTTCTTCTCTAAAAAACCTCAGTT	401
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17279	TTTTATGTTATGGTTTTGAGGCAGAATTTCTTCTCTAAAAAACCTCAGTT	17328

C  KC877791.1	400	TTTGCTCTTAAAATGTTCAAATGATTGATATCCACCCACATTATTCAGGA	351
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17329	TTTGCTCTTAAAATGTTCAAATGATTGATATCCACCCACATTATTCAGGA	17378

C  KC877791.1	350	TAATCTTCTTTACTTAAAGTCAACTGAGTATAAATATTAAGCACATTCAC	301
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17379	TAATCTTCTTTACTTAAAGTCAACTGAGTATAAATATTAAGCACATTCAC	17428

C  KC877791.1	300	ATCTAGCAATCTGGATGTGGGCACCATAGCTTAGCCAAGTTGACGCATAC	251
			||||||||||||||||||||||||| ||||||||||||||||||||||||
  AP000432.4	17429	ATCTAGCAATCTGGATGTGGGCACCTTAGCTTAGCCAAGTTGACGCATAC	17478

C  KC877791.1	250	AATCAACCATCACAACAACCTTCATTCAATAGCATTTTCTTACAGGCATG	201
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17479	AATCAACCATCACAACAACCTTCATTCAATAGCATTTTCTTACAGGCATG	17528

C  KC877791.1	200	ATGATAAATAGGTTTTAAAACATAAATCCCCTAGTGAACCACATAAAGCA	151
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17529	ATGATAAATAGGTTTTAAAACATAAATCCCCTAGTGAACCACATAAAGCA	17578

C  KC877791.1	150	TGCTTTTATTAAGAAAACAAATTACCTTGCTTTTATTTTTCTTTGCTCTT	101
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17579	TGCTTTTATTAAGAAAACAAATTACCTTGCTTTTATTTTTCTTTGCTCTT	17628

C  KC877791.1	100	TTCAGTCAGTTGTGTGGTAGTGAGGATGGGGTGGGGACGGGGGAAGGAGG	51
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17629	TTCAGTCAGTTGTGTGGTAGTGAGGATGGGGTGGGGACGGGGGAAGGAGG	17678

C  KC877791.1	50	ATTGGATGTCTGTTTTCAGGAGCATCTGCAGCATAACCATGTCAAATATT	1
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AP000432.4	17679	ATTGGATGTCTGTTTTCAGGAGCATCTGCAGCATAACCATGTCAAATATT	17728

Compact alignment

skip 250 bps 100% identity alignment

C  KC877791.1	300	ATCTAGCAATCTGGATGTGGGCACCATAGCTTAGCCAAGTTGACGCATAC	251
			||||||||||||||||||||||||| ||||||||||||||||||||||||
  AP000432.4	17429	ATCTAGCAATCTGGATGTGGGCACCTTAGCTTAGCCAAGTTGACGCATAC	17478

skip 250 bps 100% identity alignment

Overview

Query
KC877791.1 - 550 bps
Hit
AP000432.4 - 141832 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 550 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.818205501550-117179177281
Short-link