<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

C  BX537334.4	36872	GTACTCACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCG	36823
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	35772	GTACTCACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGAAGGCG	35821

C  BX537334.4	36822	GAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGAGACA	36773
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	35822	GAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGAGACA	35871

C  BX537334.4	36772	GAGTGAGACTCTGTCTCAAAAATAAAAGAAAAAAGATCAACCTGAGCCAG	36723
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	35872	GAGTGAGACTCTGTCTCAAAAATAAAAGAAAAAAGATCAACCTGAGCCAG	35921

C  BX537334.4	36722	CACAGGCTTCTTGTACCCTGAGCTGTGGCTTCTTCCCTGCGTGGAAACAA	36673
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	35922	CACAGGCTTCTTGTACCCTGAGCTGTGGCTTCTTCCCTGCGTGGAAACAA	35971

C  BX537334.4	36672	CAGGTGTCTGTCGTTGGCTTCAAGGTCGGCGGCGTCTGAACCGCCTCTAA	36623
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	35972	CAGGTGTCTGTCGTTGGCTTCAAGGTCGGCGGCGTCTGAACCGCCTCTAA	36021

C  BX537334.4	36622	GGGGCAGGGTTGGGGACAGTGGGGAATCCAGGTCCGGTCGGGAACGCCCG	36573
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36022	GGGGCAGGGTTGGGGACAGTGGGGAATCCAGGTCCGGTCGGGAACGCCCG	36071

C  BX537334.4	36572	TGTGGATTTGCAGACGCTGTAGTTTTGGGGATGTGGAAGAAAAATAAGTC	36523
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36072	TGTGGATTTGCAGACGCTGTAGTTTTGGGGATGTGGAAGAAAAATAAGTC	36121

C  BX537334.4	36522	TTAGGCTGGGTGCGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGC	36473
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36122	TTAGGCTGGGTGCGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGC	36171

C  BX537334.4	36472	TGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGAAGGTTGCAGTGAGCCG	36423
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36172	TGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGAAGGTTGCAGTGAGCCG	36221

C  BX537334.4	36422	AGATCGCGCCATTGCACTCCAGCCTGGGTGACAGACCGAGATTCTGTCTG	36373
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36222	AGATCGCGCCATTGCACTCCAGCCTGGGTGACAGACCGAGATTCTGTCTG	36271

C  BX537334.4	36372	AAAAATAAAAATAAAAAATAAAATAAAGTGGGCCGGGCGCGGTGGCTCAG	36323
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36272	AAAAATAAAAATAAAAAATAAAATAAAGTGGGCCGGGCGCGGTGGCTCAG	36321

C  BX537334.4	36322	GCCTGTCATCCCAGCACTTTGGGAGGCCTAGGTGGGTGGATCACGAGGTC	36273
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36322	GCCTGTCATCCCAGCACTTTGGGAGGCCTAGGTGGGTGGATCACGAGGTC	36371

C  BX537334.4	36272	AGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAA	36223
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36372	AGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAA	36421

C  BX537334.4	36222	AAATACAAAAAATTAGCCGGGCATGATGGCTGGTGCCTGTAGTCTCAGCT	36173
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36422	AAATACAAAAAATTAGCCGGGCATGATGGCTGGTGCCTGTAGTCTCAGCT	36471

C  BX537334.4	36172	ACTCAGGAGGCTGAGGCAGAGAATGGCGTGAACCCGGGAGGCGGAGCTGG	36123
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36472	ACTCAGGAGGCTGAGGCAGAGAATGGCGTGAACCCGGGAGGCGGAGCTGG	36521

C  BX537334.4	36122	CAGTGACCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGCGAG	36073
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36522	CAGTGACCCGAGATCGCGCCATTGCACTCCAGCCTGGGTGACAGAGCGAG	36571

C  BX537334.4	36072	ACTCTGTTTCCACAAAAAAAAAGAAAGAAAGAAAGAAGAAAGAAAGAAAA	36023
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36572	ACTCTGTTTCCACAAAAAAAAAGAAAGAAAGAAAGAAGAAAGAAAGAAAA	36621

C  BX537334.4	36022	AGAAAGAGAGAGAGAGAAAGAAAAGAAAGAAAGAAAAGAAAGAAAGAAAG	35973
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36622	AGAAAGAGAGAGAGAGAAAGAAAAGAAAGAAAGAAAAGAAAGAAAGAAAG	36671

C  BX537334.4	35972	AAAGAAGAAAGAAAGAAAGGAAAGAAAGAAAAGAAAGAAAGAAAGAAAAA	35923
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36672	AAAGAAGAAAGAAAGAAAGGAAAGAAAGAAAAGAAAGAAAGAAAGAAAAA	36721

C  BX537334.4	35922	GAAAGAAAGAAAGATAGAAAGAAAGAAAGAAAAGGACAGGACACACAGAA	35873
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36722	GAAAGAAAGAAAGATAGAAAGAAAGAAAGAAAAGGACAGGACACACAGAA	36771

C  BX537334.4	35872	AGCAGAGAAACAGCTGCATTGGGTGTGGGTTGGCGTTTACCTTGTTTGAA	35823
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36772	AGCAGAGAAACAGCTGCATTGGGTGTGGGTTGGCGTTTACCTTGTTTGAA	36821

C  BX537334.4	35822	CCCGGTTGGAACATTTGGCTGCCTTTGGCTGAGATTCAGTGATTGCCACA	35773
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36822	CCCGGTTGGAACATTTGGCTGCCTTTGGCTGAGATTCAGTGATTGCCACA	36871

C  BX537334.4	35772	AGAGTAGGTTCTGGTCTGTTGACACCTCCTGTTACGTCACAGTTCACTAT	35723
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36872	AGAGTAGGTTCTGGTCTGTTGACACCTCCTGTTACGTCACAGTTCACTAT	36921

C  BX537334.4	35722	GTACAGAGAAATCTTTAGGCCGAACTTAAAATATGTTGGGAGGCAACTTC	35673
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36922	GTACAGAGAAATCTTTAGGCCGAACTTAAAATATGTTGGGAGGCAACTTC	36971

C  BX537334.4	35672	AGGAACCATCAATATTGTAGACAGAAGTTTCTCTTTTCACCTTTTTTGGT	35623
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	36972	AGGAACCATCAATATTGTAGACAGAAGTTTCTCTTTTCACCTTTTTTGGT	37021

C  BX537334.4	35622	AGACACAGGATTTCACTGTGTCCCCCAGGCTGGAGTGCAGCCTCGACCTC	35573
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37022	AGACACAGGATTTCACTGTGTCCCCCAGGCTGGAGTGCAGCCTCGACCTC	37071

C  BX537334.4	35572	CTAGACTCAAGTGATCCTCCCTCCTCAGCCTCCTGAGTAGCTGGGACTAC	35523
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37072	CTAGACTCAAGTGATCCTCCCTCCTCAGCCTCCTGAGTAGCTGGGACTAC	37121

C  BX537334.4	35522	AGGAGGAGGGAAGAGGTCTCTGTAGCTGGTCCTACAAGTGCACACCACTA	35473
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37122	AGGAGGAGGGAAGAGGTCTCTGTAGCTGGTCCTACAAGTGCACACCACTA	37171

C  BX537334.4	35472	CGCCCAGCTAATTTTTATATTTTTTGTAGAGACAGGGTCTTGCCATGTTG	35423
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37172	CGCCCAGCTAATTTTTATATTTTTTGTAGAGACAGGGTCTTGCCATGTTG	37221

C  BX537334.4	35422	CTCAGGCTCGTCTGGAACTCCTGGGCTCAAGCGATCTGCCTGCCTCGGCC	35373
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37222	CTCAGGCTCGTCTGGAACTCCTGGGCTCAAGCGATCTGCCTGCCTCGGCC	37271

C  BX537334.4	35372	TCTCCCAAAAGTGCTGGTTTTTCAATCTCTGTTGACTTGATCAGTGGAAA	35323
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37272	TCTCCCAAAAGTGCTGGTTTTTCAATCTCTGTTGACTTGATCAGTGGAAA	37321

C  BX537334.4	35322	ATGGTAATCGATTTTAACGTTCAATACCGGTGTGTGGTAGCATATATTTG	35273
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37322	ATGGTAATCGATTTTAACGTTCAATACCGGTGTGTGGTAGCATATATTTG	37371

C  BX537334.4	35272	TATGTGTTTTGACAACTCTATGCAAAGTCGAGTGATTCTCCTGCTGTGTG	35223
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37372	TATGTGTTTTGACAACTCTATGCAAAGTCGAGTGATTCTCCTGCTGTGTG	37421

C  BX537334.4	35222	TGATCAGAGGACATTTTGGGACATTTAGGGCTGTGTTACAATTTTAAGCG	35173
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37422	TGATCAGAGGACATTTTGGGACATTTAGGGCTGTGTTACAATTTTAAGCG	37471

C  BX537334.4	35172	TGGGGACTTGGAGTATGAATGATTAGCATGGGACCAGGTGGGCAGGTGCG	35123
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37472	TGGGGACTTGGAGTATGAATGATTAGCATGGGACCAGGTGGGCAGGTGCG	37521

C  BX537334.4	35122	CCTGGCATCAGGGGTGAGAGGGCCGCATACCTGACTCCACTCCTCATCCC	35073
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37522	CCTGGCATCAGGGGTGAGAGGGCCGCATACCTGACTCCACTCCTCATCCC	37571

C  BX537334.4	35072	TGACTTCCTTCTCCAGCTCAGCTGTGGCACGGGCACCCTTGTGCCAGAGG	35023
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37572	TGACTTCCTTCTCCAGCTCAGCTGTGGCACGGGCACCCTTGTGCCAGAGG	37621

C  BX537334.4	35022	AAACGGGCACTTTTTTCTTTCTCTTTCTTTTCCTTCCCTCCCTCCCTCCC	34973
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37622	AAACGGGCACTTTTTTCTTTCTCTTTCTTTTCCTTCCCTCCCTCCCTCCC	37671

C  BX537334.4	34972	TCTCTCTCTCTCTCTCTTTCTTCTTTCTTTTTTTCTTTTCTTTTCTTTTT	34923
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37672	TCTCTCTCTCTCTCTCTTTCTTCTTTCTTTTTTTCTTTTCTTTTCTTTTT	37721

C  BX537334.4	34922	GGAGACGGAGTCTATTGCTGTCCCCCAGGCTGGAGTGCAATGGCACGATC	34873
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL954722.18	37722	GGAGACGGAGTCTATTGCTGTCCCCCAGGCTGGAGTGCAATGGCACGATC	37771

Overview

Query
BX537334.4 - 36872 bps
Hit
AL954722.18 - 37771 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
1100020003487336872-135772377711
Short-link