<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 0 bps

Full alignment

AL645685.12	1	GAATTCAACTCAGCAACCAGCATTGACAGAGTCACAGGGCTGCAAGAGAT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5277	GAATTCAACTCAGCAACCAGCATTGACAGAGTCACAGGGCTGCAAGAGAT	5326

AL645685.12	51	CTATCCTGTGAGGCCCTGAGGCCACACCTGGCAATACTGTGGGAATTTCT	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5327	CTATCCTGTGAGGCCCTGAGGCCACACCTGGCAATACTGTGGGAATTTCT	5376

AL645685.12	101	TGTTCTGCTGCAGATGTGGAAAAGGGGGGAAGACAAAAGTTCTCACATAG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5377	TGTTCTGCTGCAGATGTGGAAAAGGGGGGAAGACAAAAGTTCTCACATAG	5426

AL645685.12	151	TTTAAATTCTTTGTACACCCTAGCCCCGATAAAGGGAAGGAGCCTAAGGG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5427	TTTAAATTCTTTGTACACCCTAGCCCCGATAAAGGGAAGGAGCCTAAGGG	5476

AL645685.12	201	AATACAAGCCAGATGGACATCCAGGAATGGCCCATTCCATAATACAAATA	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5477	AATACAAGCCAGATGGACATCCAGGAATGGCCCATTCCATAATACAAATA	5526

AL645685.12	251	CAGTGCCAAAAAGTTCTGCCTGGAACACTTCATCTCAGTTCAAGGCAACT	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5527	CAGTGCCAAAAAGTTCTGCCTGGAACACTTCATCTCAGTTCAAGGCAACT	5576

AL645685.12	301	ACTGTATGCCATAAACTGCATGGTTTTACTGAGAAGGCACAATTTCCTGT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5577	ACTGTATGCCATAAACTGCATGGTTTTACTGAGAAGGCACAATTTCCTGT	5626

AL645685.12	351	TCCTAGAGAAACACTGCGGTTTAATTACAGACAACAAAGCCTTTTAATAT	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5627	TCCTAGAGAAACACTGCGGTTTAATTACAGACAACAAAGCCTTTTAATAT	5676

AL645685.12	401	TTGTCTACCGTCATCATTCCTTAGCACAGAAGTATCAAATTAGCGTACCT	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5677	TTGTCTACCGTCATCATTCCTTAGCACAGAAGTATCAAATTAGCGTACCT	5726

AL645685.12	451	TAGAATTGCATTGTGCTAGAATTGGGTTTTTAAAGTGCCATTTGGCACCG	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5727	TAGAATTGCATTGTGCTAGAATTGGGTTTTTAAAGTGCCATTTGGCACCG	5776

AL645685.12	501	AAGAAAAAAATAGAAAAAGATATCAGGAGATTTCAAAGACCTCCCATACT	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5777	AAGAAAAAAATAGAAAAAGATATCAGGAGATTTCAAAGACCTCCCATACT	5826

AL645685.12	551	CACGGATTGTAAAATTAATATTATAAAAATGGTCATCCTACCAAAAGCAA	600
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5827	CACGGATTGTAAAATTAATATTATAAAAATGGTCATCCTACCAAAAGCAA	5876

AL645685.12	601	TTTACAAACTCAATTCAACCTTCCTGAAATTATAATGTCATTCTTCATAG	650
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5877	TTTACAAACTCAATTCAACCTTCCTGAAATTATAATGTCATTCTTCATAG	5926

AL645685.12	651	AAACAGAAAAATAATCTTTAAAGCCATATAAAAGCACAAAAGACCCAGGA	700
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5927	AAACAGAAAAATAATCTTTAAAGCCATATAAAAGCACAAAAGACCCAGGA	5976

AL645685.12	701	CAACTAAAGCAATCTTGAGCAAAAATAATAATTCTAGGAGCAACAGCATT	750
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	5977	CAACTAAAGCAATCTTGAGCAAAAATAATAATTCTAGGAGCAACAGCATT	6026

AL645685.12	751	CCTGATTTCAATTTATACTACAAAGCAAATAGCAATAAAAGCTGCATGGC	800
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6027	CCTGATTTCAATTTATACTACAAAGCAAATAGCAATAAAAGCTGCATGGC	6076

AL645685.12	801	ACTGGCACAACAACAGATGCCTGGATTGGCAGAGAAGAATAGAAGACCGG	850
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6077	ACTGGCACAACAACAGATGCCTGGATTGGCAGAGAAGAATAGAAGACCGG	6126

AL645685.12	851	GATATGAACCCATGCAGTTACAACAACCTGATTCCCAATAAGGGTGCAGA	900
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6127	GATATGAACCCATGCAGTTACAACAACCTGATTCCCAATAAGGGTGCAGA	6176

AL645685.12	901	AAAACAGAGCCCTGTCTTTTGCCCTGAAAAAAAAAAAAATTCTTTTATTT	950
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6177	AAAACAGAGCCCTGTCTTTTGCCCTGAAAAAAAAAAAAATTCTTTTATTT	6226

AL645685.12	951	CCTTTCCTTTTCTTTTCTTTTGCTTTCTTTTTTTCTTTCTTTTTGATAAG	1000
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6227	CCTTTCCTTTTCTTTTCTTTTGCTTTCTTTTTTTCTTTCTTTTTGATAAG	6276

AL645685.12	1001	TATAATTCTTTATTTTATATATAGAAAAAATGTTTTGGCTTGCAGATTGA	1050
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6277	TATAATTCTTTATTTTATATATAGAAAAAATGTTTTGGCTTGCAGATTGA	6326

AL645685.12	1051	ACTTAGAAACACATACATACTGGCTACCTTCTCACCCAGAGAACTCTGCA	1100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6327	ACTTAGAAACACATACATACTGGCTACCTTCTCACCCAGAGAACTCTGCA	6376

AL645685.12	1101	CCTGAACCTGAAATAATGCTTTTCCCTCTTTTACTGAAAATAAATATTTT	1150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6377	CCTGAACCTGAAATAATGCTTTTCCCTCTTTTACTGAAAATAAATATTTT	6426

AL645685.12	1151	TCTCACACAATATATCCTGATTATGCTTTCCCTTTCCTCTACTTTCCTGG	1200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6427	TCTCACACAATATATCCTGATTATGCTTTCCCTTTCCTCTACTTTCCTGG	6476

AL645685.12	1201	GTTCCTCCCCCACCCCCCACTCCTCTATGGATCCACCCCTTTCTGTGTCT	1250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6477	GTTCCTCCCCCACCCCCCACTCCTCTATGGATCCACCCCTTTCTGTGTCT	6526

AL645685.12	1251	CATTAGAAAACAAACCAGCTTCTAAGGGATGGTAATAAAATATAATAAGA	1300
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6527	CATTAGAAAACAAACCAGCTTCTAAGGGATGGTAATAAAATATAATAAGA	6576

AL645685.12	1301	TAAAACAAACTTAATGCACTGAAATAGAACAAAACAGAAAGAAAGAGAGA	1350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6577	TAAAACAAACTTAATGCACTGAAATAGAACAAAACAGAAAGAAAGAGAGA	6626

AL645685.12	1351	GAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGACAGAAAGAGAGAAA	1400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6627	GAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGACAGAAAGAGAGAAA	6676

AL645685.12	1401	GAAAGAGAGAGAAAGAAAGAAAGAGAGAAAGACAGAAAGAAAGAGAGAGA	1450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6677	GAAAGAGAGAGAAAGAAAGAAAGAGAGAAAGACAGAAAGAAAGAGAGAGA	6726

AL645685.12	1451	AAGAAAGAGAGAGAGAGAGAAAGAAAGAAGGAAAGAAAGAGAGAAAGAAA	1500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6727	AAGAAAGAGAGAGAGAGAGAAAGAAAGAAGGAAAGAAAGAGAGAAAGAAA	6776

AL645685.12	1501	GAAAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6777	GAAAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	6826

AL645685.12	1551	GAAAGAAAGAAAGGAAAGGAAGAAAGGAAGAGGGAGGGAGAGAGGGAGGA	1600
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6827	GAAAGAAAGAAAGGAAAGGAAGAAAGGAAGAGGGAGGGAGAGAGGGAGGA	6876

AL645685.12	1601	AGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGAAGGAAG	1650
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6877	AGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGAAGGAAG	6926

AL645685.12	1651	GAAGGAAGGAAGGAAGAAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGA	1700
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6927	GAAGGAAGGAAGGAAGAAAAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGA	6976

AL645685.12	1701	AGGAAGGAAGGAAGGAAGGAAAGGAGCCCTAGAGAAGGCACAAGAAGCAA	1750
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	6977	AGGAAGGAAGGAAGGAAGGAAAGGAGCCCTAGAGAAGGCACAAGAAGCAA	7026

AL645685.12	1751	AGAACCATTCATTTATACTCTAAAAAAAAACTCATAACACTAAGCTGAAA	1800
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	7027	AGAACCATTCATTTATACTCTAAAAAAAAACTCATAACACTAAGCTGAAA	7076

AL645685.12	1801	GCAATAATATATAAACAAATGACCTGTGGGGTCAAAAAAAAAAAGAAAGA	1850
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	7077	GCAATAATATATAAACAAATGACCTGTGGGGTCAAAAAAAAAAAGAAAGA	7126

AL645685.12	1851	AAAAAAGAATATATAAATAAAAAATAATATAAAAGTTTTTAATAAAGGAA	1900
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	7127	AAAAAAGAATATATAAATAAAAAATAATATAAAAGTTTTTAATAAAGGAA	7176

AL645685.12	1901	ACGCCCTGGCATGACATTATGAGACAAGGAACCTCCGAAGATACTGAGTT	1950
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	7177	ACGCCCTGGCATGACATTATGAGACAAGGAACCTCCGAAGATACTGAGTT	7226

AL645685.12	1951	TGTTTTCTGTCTACTGTCCCCTTCTGGGCATGCAGTCTGCCCTTAAGAGT	2000
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL732549.16	7227	TGTTTTCTGTCTACTGTCCCCTTCTGGGCATGCAGTCTGCCCTTAAGAGT	7276

Overview

Query
AL645685.12 - 218950 bps
Hit
AL732549.16 - 7276 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

Short-link