<=>End overlap alignment

Alignment #1 HSP: 2005 bps / non-identical: 850 bps

Full alignment

AL683807.22	1	GAATTCCCGGGCTCCAGCAATCCTTCCAAGAAAAGAGGTAGACGTCTGTT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43086	GAATTCCCGGGCTCCAGCAATCCTTCCAAGAAAAGAGGTAGACGTCTGTT	43135

AL683807.22	51	TGGAAATCATTACAATTCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTC	100
			|||||||||||||||||||||||||||||||||||||  |||||||||||
AL691415.17	43136	TGGAAATCATTACAATTCTTTTTTTTTTTTTTTTTTT--GAGACAGAGTC	43183

AL683807.22	101	CAGCTCTGTTGCCCACGCTGGAGTGCAGTGGCAAAATCGTAGTTCACTGC	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43184	CAGCTCTGTTGCCCACGCTGGAGTGCAGTGGCAAAATCGTAGTTCACTGC	43233

AL683807.22	151	GGGCTGGAACTCCTGGGCTCAAGCGATCCTTGTGCCTCAGCCCCTCCCGA	200
			||||||||||||||| ||||||||||||||  |||||||||| |||||||
AL691415.17	43234	GGGCTGGAACTCCTGAGCTCAAGCGATCCTCCTGCCTCAGCCACTCCCGA	43283

AL683807.22	201	GTGGCTGAGACTACAGGTGTGTGCCACCACGCCCAGCTCATTTTTTTCTT	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43284	GTGGCTGAGACTACAGGTGTGTGCCACCACGCCCAGCTCATTTTTTTCTT	43333

AL683807.22	251	TTTCTTCTTTTTACAGACGGGAGGGTCTCGCCATGTTGCGCAGGCTGGCC	300
			||||||||||||||||||||||||||||||||||||||| ||||||||||
AL691415.17	43334	TTTCTTCTTTTTACAGACGGGAGGGTCTCGCCATGTTGCCCAGGCTGGCC	43383

AL683807.22	301	TTGAACTTCCGGCCTCAAGTAATCCTCCCCCCTCGGCCTCCCAAAGTGCT	350
			||||||||| ||||||||||||||||||||||||||||||||||||||||
AL691415.17	43384	TTGAACTTCTGGCCTCAAGTAATCCTCCCCCCTCGGCCTCCCAAAGTGCT	43433

AL683807.22	351	GGGATCACAGGCATGAGACACTGCACCTGGCCAACGGCATGCTGAAATCT	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43434	GGGATCACAGGCATGAGACACTGCACCTGGCCAACGGCATGCTGAAATCT	43483

AL683807.22	401	TCACTGCAGAAAAGCAAAGCACAAATGGCTTCAGCTGATGATAAGCACTT	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43484	TCACTGCAGAAAAGCAAAGCACAAATGGCTTCAGCTGATGATAAGCACTT	43533

AL683807.22	451	TGCAGAAGAATACAAAACGCTGATATTAAAA-AAAAAAAATGACTTGGGC	499
			||||||||||||||||||||||||||||||| ||||||||||||||||||
AL691415.17	43534	TGCAGAAGAATACAAAACGCTGATATTAAAAAAAAAAAAATGACTTGGGC	43583

AL683807.22	500	TAGGGTGTGGTCTGCCGAGGAGGACAGAGAAGGGATATTAAGCGGGGGGC	549
			||||||||||||||||||||||||||||||||||||||||||| ||||| 
AL691415.17	43584	TAGGGTGTGGTCTGCCGAGGAGGACAGAGAAGGGATATTAAGCTGGGGGT	43633

AL683807.22	550	GGATGTATTTTTCACAGGAGAGATTGTAGGAACCGTCCGTGCTGCAGAAG	599
			||||| ||||||||| ||||||||||||||||||||||||||||||||||
AL691415.17	43634	GGATGAATTTTTCACGGGAGAGATTGTAGGAACCGTCCGTGCTGCAGAAG	43683

AL683807.22	600	GATGGAATGGCCGTGGGTCTAGATGAGTGTCTGAGTCATACATGAGCTCA	649
			|||||||||||| |||||||||||||||||||||||||||||||||||||
AL691415.17	43684	GATGGAATGGCCTTGGGTCTAGATGAGTGTCTGAGTCATACATGAGCTCA	43733

AL683807.22	650	TAGCGTCCAGGTAGAGCCTGTGGTTGTGTTGTGCTGAGTTAGAAATCTGT	699
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43734	TAGCGTCCAGGTAGAGCCTGTGGTTGTGTTGTGCTGAGTTAGAAATCTGT	43783

AL683807.22	700	TTTTATCTGTCACTTCCTCTGGCCCGCACGGCCTCTCACGCGATGGTGGA	749
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43784	TTTTATCTGTCACTTCCTCTGGCCCGCACGGCCTCTCACGCGATGGTGGA	43833

AL683807.22	750	GAGAATTACCCCGTTTCCCGGAGTGGAATGTTTGTTTACTGAGTGCCCTC	799
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43834	GAGAATTACCCCGTTTCCCGGAGTGGAATGTTTGTTTACTGAGTGCCCTC	43883

AL683807.22	800	CTCTGGTTCAAACACGGACTCTGCATTTTCAGCGTGGTTTGCTGTTTCTT	849
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43884	CTCTGGTTCAAACACGGACTCTGCATTTTCAGCGTGGTTTGCTGTTTCTT	43933

AL683807.22	850	TGGGCAAATGGGTCAGTGTCCTCACGCCTTAAAATCTCCTCTGGGACTTC	899
			||||||||||||||||||||||||||||| ||||||||||||||||||||
AL691415.17	43934	TGGGCAAATGGGTCAGTGTCCTCACGCCTCAAAATCTCCTCTGGGACTTC	43983

AL683807.22	900	TGGACAGTATTCCTTAAATCTCCATCTTTCTTCCAACATTTAGCAAGATG	949
			||||| ||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43984	TGGACGGTATTCCTTAAATCTCCATCTTTCTTCCAACATTTAGCAAGATG	44033

AL683807.22	950	AGGACTGGAATTTTCTTCCTATATTTCTTTTCTTTTCTTTTCTTTTCTTT	999
			|||||||||||||||||||| | |||||||||||||||||||||||||||
AL691415.17	44034	AGGACTGGAATTTTCTTCCTGTCTTTCTTTTCTTTTCTTTTCTTTTCTTT	44083

AL683807.22	1000	CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	1049
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44084	CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	44133

AL683807.22	1050	TTCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCCTTTCTTTCTTTCTTT	1099
			|||||||||||||||||||||| |||||||||| |||||||||  |||||
AL691415.17	44134	TTCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTT-CTTTCTTTC--TCTTT	44180

AL683807.22	1100	CTCTTTCCTTTTCTTTCTCTCTTTTTTTTTTTTGTGAGATGGAGTCTTGC	1149
			|  ||||  ||||| |||||||||||||||||||||||||||||||||||
AL691415.17	44181	CCTTTTC--TTTCTCTCTCTCTTTTTTTTTTTTGTGAGATGGAGTCTTGC	44228

AL683807.22	1150	TCTGTCGCCAGGCTGGAGTGCAGTGGTGTGATTTTGGCTCACTGCAACCT	1199
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44229	TCTGTCGCCAGGCTGGAGTGCAGTGGTGTGATTTTGGCTCACTGCAACCT	44278

AL683807.22	1200	CCACCTCCCGGGTTCAGACGATTCCTCTGCCTCAGCCTCCTGAGCAGCTG	1249
			|| |||||| ||||||||||||||||||||||||||||||||||||| ||
AL691415.17	44279	CCGCCTCCCAGGTTCAGACGATTCCTCTGCCTCAGCCTCCTGAGCAGGTG	44328

AL683807.22	1250	GGACTACAGCCACGTGCCACCACGCCCAGCTAAGTTTTTTGTATTTTATT	1299
			||||||||||||| ||||||||||||||||||||||||||||||||||||
AL691415.17	44329	GGACTACAGCCACATGCCACCACGCCCAGCTAAGTTTTTTGTATTTTATT	44378

AL683807.22	1300	AGAGATGGGATTTCACAGTGTTCGCTAGGATGGTCTTGATCTCCTGACCT	1349
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44379	AGAGATGGGATTTCACAGTGTTCGCTAGGATGGTCTTGATCTCCTGACCT	44428

AL683807.22	1350	CGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAG	1399
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44429	CGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAG	44478

AL683807.22	1400	CCACTGTGCCCAGCTGGAATTTTCTTTTGAAGTGTACCAGCGTCCCCTGT	1449
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44479	CCACTGTGCCCAGCTGGAATTTTCTTTTGAAGTGTACCAGCGTCCCCTGT	44528

AL683807.22	1450	ATAAGTCTGTGGAAGAAAATGCATGATTATTATTGTGCTTATTATGATTA	1499
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44529	ATAAGTCTGTGGAAGAAAATGCATGATTATTATTGTGCTTATTATGATTA	44578

AL683807.22	1500	TTGTCATTATTATTTTGAAAAAAGGTCTCGCTCCTTTGCCCGGGTTGGAG	1549
			|||||||||||||||||||||||| |||||||||||||||||||||||||
AL691415.17	44579	TTGTCATTATTATTTTGAAAAAAGCTCTCGCTCCTTTGCCCGGGTTGGAG	44628

AL683807.22	1550	GGCAGTGTTGCGATCATAACTCATTGCAGCCTTGACCTACCGGGCTGAAG	1599
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44629	GGCAGTGTTGCGATCATAACTCATTGCAGCCTTGACCTACCGGGCTGAAG	44678

AL683807.22	1600	TAGTCCTCCCACCTCAGCCTCCTAAGTAGCTGAGACTACAAGCACATGCA	1649
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44679	TAGTCCTCCCACCTCAGCCTCCTAAGTAGCTGAGACTACAAGCACATGCA	44728

AL683807.22	1650	ACCACACCTGGCTAACTTTTTGTATTATTATTA-TTATTTTTTTTTTTTG	1698
			||||||||||||||||||||||||||||||||| ||||||||||||||||
AL691415.17	44729	ACCACACCTGGCTAACTTTTTGTATTATTATTATTTATTTTTTTTTTTTG	44778

AL683807.22	1699	TAGAGATGGAGTCTTGCTGTGCTGCAGAGGCTGATCCTGAATTCCTGGGC	1748
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44779	TAGAGATGGAGTCTTGCTGTGCTGCAGAGGCTGATCCTGAATTCCTGGGC	44828

AL683807.22	1749	TCAAGCAATCCTTCTAAATCAGCCTCCCAAATAGCTGGGATTACAGGCAT	1798
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44829	TCAAGCAATCCTTCTAAATCAGCCTCCCAAATAGCTGGGATTACAGGCAT	44878

AL683807.22	1799	GCACCAGCATACTCGACTAATTATGTTTGCAGAGATGGGGTCTTGCTAGG	1848
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44879	GCACCAGCATACTCGACTAATTATGTTTGCAGAGATGGGGTCTTGCTAGG	44928

AL683807.22	1849	TTGCCCAGGCTGGTCTTGAACTCCTGGGATGAGGTGATCCTCTGGCCTCA	1898
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44929	TTGCCCAGGCTGGTCTTGAACTCCTGGGATGAGGTGATCCTCTGGCCTCA	44978

AL683807.22	1899	GCCTCTGAAAGCAGTGGGGGTACAGGCCTGGGCACCCCATCTTGGCAAAG	1948
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	44979	GCCTCTGAAAGCAGTGGGGGTACAGGCCTGGGCACCCCATCTTGGCAAAG	45028

AL683807.22	1949	TATTACGGATGGAAGGTGCAGACAGAGAGGTGTATGTGGTTGTCTGTGAG	1998
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	45029	TATTACGGATGGAAGGTGCAGACAGAGAGGTGTATGTGGTTGTCTGTGAG	45078

AL683807.22	1999	TTCATCA	2005
			|||||||
AL691415.17	45079	TTCATCA	45085

Compact alignment

skip 50 bps 100% identity alignment

AL683807.22	51	TGGAAATCATTACAATTCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTC	100
			|||||||||||||||||||||||||||||||||||||  |||||||||||
AL691415.17	43136	TGGAAATCATTACAATTCTTTTTTTTTTTTTTTTTTT--GAGACAGAGTC	43183

skip 50 bps 100% identity alignment

AL683807.22	151	GGGCTGGAACTCCTGGGCTCAAGCGATCCTTGTGCCTCAGCCCCTCCCGA	200
			||||||||||||||| ||||||||||||||  |||||||||| |||||||
AL691415.17	43234	GGGCTGGAACTCCTGAGCTCAAGCGATCCTCCTGCCTCAGCCACTCCCGA	43283

skip 50 bps 100% identity alignment

AL683807.22	251	TTTCTTCTTTTTACAGACGGGAGGGTCTCGCCATGTTGCGCAGGCTGGCC	300
			||||||||||||||||||||||||||||||||||||||| ||||||||||
AL691415.17	43334	TTTCTTCTTTTTACAGACGGGAGGGTCTCGCCATGTTGCCCAGGCTGGCC	43383

AL683807.22	301	TTGAACTTCCGGCCTCAAGTAATCCTCCCCCCTCGGCCTCCCAAAGTGCT	350
			||||||||| ||||||||||||||||||||||||||||||||||||||||
AL691415.17	43384	TTGAACTTCTGGCCTCAAGTAATCCTCCCCCCTCGGCCTCCCAAAGTGCT	43433

skip 100 bps 100% identity alignment

AL683807.22	451	TGCAGAAGAATACAAAACGCTGATATTAAAA-AAAAAAAATGACTTGGGC	499
			||||||||||||||||||||||||||||||| ||||||||||||||||||
AL691415.17	43534	TGCAGAAGAATACAAAACGCTGATATTAAAAAAAAAAAAATGACTTGGGC	43583

AL683807.22	500	TAGGGTGTGGTCTGCCGAGGAGGACAGAGAAGGGATATTAAGCGGGGGGC	549
			||||||||||||||||||||||||||||||||||||||||||| ||||| 
AL691415.17	43584	TAGGGTGTGGTCTGCCGAGGAGGACAGAGAAGGGATATTAAGCTGGGGGT	43633

AL683807.22	550	GGATGTATTTTTCACAGGAGAGATTGTAGGAACCGTCCGTGCTGCAGAAG	599
			||||| ||||||||| ||||||||||||||||||||||||||||||||||
AL691415.17	43634	GGATGAATTTTTCACGGGAGAGATTGTAGGAACCGTCCGTGCTGCAGAAG	43683

AL683807.22	600	GATGGAATGGCCGTGGGTCTAGATGAGTGTCTGAGTCATACATGAGCTCA	649
			|||||||||||| |||||||||||||||||||||||||||||||||||||
AL691415.17	43684	GATGGAATGGCCTTGGGTCTAGATGAGTGTCTGAGTCATACATGAGCTCA	43733

skip 200 bps 100% identity alignment

AL683807.22	850	TGGGCAAATGGGTCAGTGTCCTCACGCCTTAAAATCTCCTCTGGGACTTC	899
			||||||||||||||||||||||||||||| ||||||||||||||||||||
AL691415.17	43934	TGGGCAAATGGGTCAGTGTCCTCACGCCTCAAAATCTCCTCTGGGACTTC	43983

AL683807.22	900	TGGACAGTATTCCTTAAATCTCCATCTTTCTTCCAACATTTAGCAAGATG	949
			||||| ||||||||||||||||||||||||||||||||||||||||||||
AL691415.17	43984	TGGACGGTATTCCTTAAATCTCCATCTTTCTTCCAACATTTAGCAAGATG	44033

AL683807.22	950	AGGACTGGAATTTTCTTCCTATATTTCTTTTCTTTTCTTTTCTTTTCTTT	999
			|||||||||||||||||||| | |||||||||||||||||||||||||||
AL691415.17	44034	AGGACTGGAATTTTCTTCCTGTCTTTCTTTTCTTTTCTTTTCTTTTCTTT	44083

skip 50 bps 100% identity alignment

AL683807.22	1050	TTCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCCTTTCTTTCTTTCTTT	1099
			|||||||||||||||||||||| |||||||||| |||||||||  |||||
AL691415.17	44134	TTCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTT-CTTTCTTTC--TCTTT	44180

AL683807.22	1100	CTCTTTCCTTTTCTTTCTCTCTTTTTTTTTTTTGTGAGATGGAGTCTTGC	1149
			|  ||||  ||||| |||||||||||||||||||||||||||||||||||
AL691415.17	44181	CCTTTTC--TTTCTCTCTCTCTTTTTTTTTTTTGTGAGATGGAGTCTTGC	44228

skip 50 bps 100% identity alignment

AL683807.22	1200	CCACCTCCCGGGTTCAGACGATTCCTCTGCCTCAGCCTCCTGAGCAGCTG	1249
			|| |||||| ||||||||||||||||||||||||||||||||||||| ||
AL691415.17	44279	CCGCCTCCCAGGTTCAGACGATTCCTCTGCCTCAGCCTCCTGAGCAGGTG	44328

AL683807.22	1250	GGACTACAGCCACGTGCCACCACGCCCAGCTAAGTTTTTTGTATTTTATT	1299
			||||||||||||| ||||||||||||||||||||||||||||||||||||
AL691415.17	44329	GGACTACAGCCACATGCCACCACGCCCAGCTAAGTTTTTTGTATTTTATT	44378

skip 200 bps 100% identity alignment

AL683807.22	1500	TTGTCATTATTATTTTGAAAAAAGGTCTCGCTCCTTTGCCCGGGTTGGAG	1549
			|||||||||||||||||||||||| |||||||||||||||||||||||||
AL691415.17	44579	TTGTCATTATTATTTTGAAAAAAGCTCTCGCTCCTTTGCCCGGGTTGGAG	44628

skip 100 bps 100% identity alignment

AL683807.22	1650	ACCACACCTGGCTAACTTTTTGTATTATTATTA-TTATTTTTTTTTTTTG	1698
			||||||||||||||||||||||||||||||||| ||||||||||||||||
AL691415.17	44729	ACCACACCTGGCTAACTTTTTGTATTATTATTATTTATTTTTTTTTTTTG	44778

skip 307 bps 100% identity alignment

Overview

Query
AL683807.22 - 189825 bps
Hit
AL691415.17 - 45085 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2005 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
198.79880200512005143086450851
Short-link