<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 200 bps

Full alignment

AL590235.23	157247	GAATTCTTTCCTTAGAAAATCCTAAGAAAGACAAAGACACCATTTATTAA	157296
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1	GAATTCTTTCCTTAGAAAATCCTAAGAAAGACAAAGACACCATTTATTAA	50

AL590235.23	157297	CACTGACACAGGGTCCTCCTTTTTCCTACTTCCCCTTCTACAGAAACCAC	157346
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	51	CACTGACACAGGGTCCTCCTTTTTCCTACTTCCCCTTCTACAGAAACCAC	100

AL590235.23	157347	GGGGTCACTGGCTGCTCAGTGAGCTGCCCGAGGGCCTGGAGAGAGAAACC	157396
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	101	GGGGTCACTGGCTGCTCAGTGAGCTGCCCGAGGGCCTGGAGAGAGAAACC	150

AL590235.23	157397	TCATCGCTGCCCAGCACTTTAGGGAACCGCACTGCTGCTTCCAGCTGTTT	157446
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	151	TCATCGCTGCCCAGCACTTTAGGGAACCGCACTGCTGCTTCCAGCTGTTT	200

AL590235.23	157447	CCCCAAAAGCAAAACATCTCTTTGAAGAGCTGGCAACAGGCACCTGGCTT	157496
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	201	CCCCAAAAGCAAAACATCTCTTTGAAGAGCTGGCAACAGGCACCTGGCTT	250

AL590235.23	157497	CTTAACACAGATAGGAAGCTCCAGTGCTGCGGGCTGCAGAGAGACCCCAG	157546
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	251	CTTAACACAGATAGGAAGCTCCAGTGCTGCGGGCTGCAGAGAGACCCCAG	300

AL590235.23	157547	TAGAGAGCGGGAGGGCCAGGGACGCTCCCTGGGGGCAGAACCAGGGGCAG	157596
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	301	TAGAGAGCGGGAGGGCCAGGGACGCTCCCTGGGGGCAGAACCAGGGGCAG	350

AL590235.23	157597	GATTCAACCCACCCTCCTCTGAGCTCTTGAGAGGGTGGCGGTCCAGGGAG	157646
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	351	GATTCAACCCACCCTCCTCTGAGCTCTTGAGAGGGTGGCGGTCCAGGGAG	400

AL590235.23	157647	GGGAGACCCCTGCCACGGGGCTGCTCAGGGCCCGCAGGGTGCCGCTGTCT	157696
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	401	GGGAGACCCCTGCCACGGGGCTGCTCAGGGCCCGCAGGGTGCCGCTGTCT	450

AL590235.23	157697	CTAGGGCGGCCCACAGATCCTGCTCGGTAGTCTCTGCAGAGCACAGACCG	157746
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	451	CTAGGGCGGCCCACAGATCCTGCTCGGTAGTCTCTGCAGAGCACAGACCG	500

AL590235.23	157747	CTCCGCTGCTCCTGGGCCCTTCCCTACTCACAGAGAAGTAGCGGACACCG	157796
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	501	CTCCGCTGCTCCTGGGCCCTTCCCTACTCACAGAGAAGTAGCGGACACCG	550

AL590235.23	157797	ACGGGGTCCTGCAGCAGGCGCTCAAAGGACACGGCCCAGCTGGCGACCCT	157846
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	551	ACGGGGTCCTGCAGCAGGCGCTCAAAGGACACGGCCCAGCTGGCGACCCT	600

AL590235.23	157847	CCTCTCACGCAGGCGCCGGCAGCTCTGCACGCTGGGGAGGCTGGCATTGC	157896
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	601	CCTCTCACGCAGGCGCCGGCAGCTCTGCACGCTGGGGAGGCTGGCATTGC	650

AL590235.23	157897	TGCTCAGGCTGTTGTTGCTGACGCAGTCCTTCAGGTCGGCGCCCGTCAAC	157946
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	651	TGCTCAGGCTGTTGTTGCTGACGCAGTCCTTCAGGTCGGCGCCCGTCAAC	700

AL590235.23	157947	TCTGCGGGACCAGCACAGACAGCACCTGCACCCCTGCCCTCCGCCCCGGC	157996
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	701	TCTGCGGGACCAGCACAGACAGCACCTGCACCCCTGCCCTCCGCCCCGGC	750

AL590235.23	157997	CCAGTGACTGCTCTGCCCGCCCACAGGAGACCCTGGGACACGCAGCAAGC	158046
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	751	CCAGTGACTGCTCTGCCCGCCCACAGGAGACCCTGGGACACGCAGCAAGC	800

AL590235.23	158047	TCTGTCCCCTCCAACACCCATTCAGTCAACAACTATGCACAGCACACCTA	158096
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	801	TCTGTCCCCTCCAACACCCATTCAGTCAACAACTATGCACAGCACACCTA	850

AL590235.23	158097	CCACCTGCCAGTGCATTCTACACACAGGGATGGAGCAGGGAACAAAACAC	158146
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	851	CCACCTGCCAGTGCATTCTACACACAGGGATGGAGCAGGGAACAAAACAC	900

AL590235.23	158147	AGACCCCAACCTTGAGCGGCTGCACATGTGTGTGCACGAGCACACACACA	158196
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	901	AGACCCCAACCTTGAGCGGCTGCACATGTGTGTGCACGAGCACACACACA	950

AL590235.23	158197	TGTTCACATGTGCAGGCCCACACAGCACCCTTGCACGCACACTCATATGC	158246
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	951	TGTTCACATGTGCAGGCCCACACAGCACCCTTGCACGCACACTCATATGC	1000

AL590235.23	158247	TCACACGTGCACACTCGCCCAAGCAACAACAAACTACAGCCACAGGGTTG	158296
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1001	TCACACGTGCACACTCGCCCAAGCAACAACAAACTACAGCCACAGGGTTG	1050

AL590235.23	158297	AACAGGAAAAGCAACTAACCTTACACAGGAGCATGTGCACACAGAGCACT	158346
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1051	AACAGGAAAAGCAACTAACCTTACACAGGAGCATGTGCACACAGAGCACT	1100

AL590235.23	158347	AAGACCATCATGGCAACAAGATGTTTCCCAAACAGGCTTGCTAGAGCGAA	158396
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1101	AAGACCATCATGGCAACAAGATGTTTCCCAAACAGGCTTGCTAGAGCGAA	1150

AL590235.23	158397	AGCAGCTGGGCGCGGGGCGCCGCGTATGCCACGTGAGTTACGTCCTGACC	158446
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1151	AGCAGCTGGGCGCGGGGCGCCGCGTATGCCACGTGAGTTACGTCCTGACC	1200

AL590235.23	158447	CACGGTGCCCTCGGGAGCGTGCTCAGTCGAAGGGGGCACGAGGCTCACCT	158496
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1201	CACGGTGCCCTCGGGAGCGTGCTCAGTCGAAGGGGGCACGAGGCTCACCT	1250

AL590235.23	158497	TCCGGATGCGAAGCCCACACACCCGTGACTGCACACTGCTCTGCATGTGG	158546
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1251	TCCGGATGCGAAGCCCACACACCCGTGACTGCACACTGCTCTGCATGTGG	1300

AL590235.23	158547	GCTCCTTCTCAACACGAAACTCTCAGGCACAGTGTCCAGAGCTAAGCCCT	158596
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1301	GCTCCTTCTCAACACGAAACTCTCAGGCACAGTGTCCAGAGCTAAGCCCT	1350

AL590235.23	158597	CAGCCACGCATGTCGGCTCGGCGGCTCATTTACAGGAGACCCGATGTGGG	158646
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1351	CAGCCACGCATGTCGGCTCGGCGGCTCATTTACAGGAGACCCGATGTGGG	1400

AL590235.23	158647	ATATGGCACAGCGCGCTCCCAGGACACCGGATCCTGCCTGACGTGTCTGC	158696
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1401	ATATGGCACAGCGCGCTCCCAGGACACCGGATCCTGCCTGACGTGTCTGC	1450

AL590235.23	158697	AAAACGGCCCTCAGTAGCCTTTGGTTCCCAGTATCTCCTGAGCTCTCGAA	158746
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1451	AAAACGGCCCTCAGTAGCCTTTGGTTCCCAGTATCTCCTGAGCTCTCGAA	1500

AL590235.23	158747	TAAAGAGAAGGGAGGTCCCCAGGAAATCCCCGTTCATCACCCTTGTCCAC	158796
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1501	TAAAGAGAAGGGAGGTCCCCAGGAAATCCCCGTTCATCACCCTTGTCCAC	1550

AL590235.23	158797	TGGATGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTG	158846
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1551	TGGATGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTG	1600

AL590235.23	158847	TGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGT	158896
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1601	TGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGT	1650

AL590235.23	158897	CCCTCCTGACG---------------------------------------	158907
			|||||||||||                                       
AL645949.16	1651	CCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGACGTGAG	1700

AL590235.23	158908	--------------------------------------------------	158907
			                                                  
AL645949.16	1701	CAGTGTGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCC	1750

AL590235.23	158908	--------------------------------------------------	158907
			                                                  
AL645949.16	1751	CCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGAC	1800

AL590235.23	158908	-TGAGCAGTGTGGGGGCGCCCCTGTCCCAGAGTGGCCGGCCTGGCCTGAG	158956
			 |||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1801	GTGAGCAGTGTGGGGGCGCCCCTGTCCCAGAGTGGCCGGCCTGGCCTGAG	1850

AL590235.23	158957	CCCAAGAAGGGATGTGGGCCAGTGTGAGCCCAGCTTCAGGGACCGCTGCC	159006
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1851	CCCAAGAAGGGATGTGGGCCAGTGTGAGCCCAGCTTCAGGGACCGCTGCC	1900

AL590235.23	159007	CACCGTGCCAGAGCACGTATGTCTCCTCTGTGAGCATAGGGTGTCCCACA	159056
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1901	CACCGTGCCAGAGCACGTATGTCTCCTCTGTGAGCATAGGGTGTCCCACA	1950

AL590235.23	159057	CGGGCTGTCCTTAGCCTGCAGCTGAGCCATGCCCTGCTGACCACAGATGA	159106
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1951	CGGGCTGTCCTTAGCCTGCAGCTGAGCCATGCCCTGCTGACCACAGATGA	2000

AL590235.23	159107	CGTGTGACAAGGTGGCCACTAAACCTGTGTTGTTAAGAAGCCCTGGGCTT	159156
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	2001	CGTGTGACAAGGTGGCCACTAAACCTGTGTTGTTAAGAAGCCCTGGGCTT	2050

AL590235.23	159157	TGGGCTTGGTTTTCTGCTGCAGCTTTATGGAATGCAGCTGACTGACAGAG	159206
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	2051	TGGGCTTGGTTTTCTGCTGCAGCTTTATGGAATGCAGCTGACTGACAGAG	2100

AL590235.23	159207	CAGCCTCACAGAATGTTCTCAGCAGCATAATAAAATACGC	159246
			||||||||||||||||||||||||||||||||||||||||
AL645949.16	2101	CAGCCTCACAGAATGTTCTCAGCAGCATAATAAAATACGC	2140

Compact alignment

skip 1650 bps 100% identity alignment

AL590235.23	158897	CCCTCCTGACG---------------------------------------	158907
			|||||||||||                                       
AL645949.16	1651	CCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGACGTGAG	1700

AL590235.23	158908	--------------------------------------------------	158907
			                                                  
AL645949.16	1701	CAGTGTGGGGGCGCCCCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCC	1750

AL590235.23	158908	--------------------------------------------------	158907
			                                                  
AL645949.16	1751	CCCGTCCCTCCTGACGCGAGCAGTGTGGGGGCGCCCCCGTCCCTCCTGAC	1800

AL590235.23	158908	-TGAGCAGTGTGGGGGCGCCCCTGTCCCAGAGTGGCCGGCCTGGCCTGAG	158956
			 |||||||||||||||||||||||||||||||||||||||||||||||||
AL645949.16	1801	GTGAGCAGTGTGGGGGCGCCCCTGTCCCAGAGTGGCCGGCCTGGCCTGAG	1850

skip 290 bps 100% identity alignment

Overview

Query
AL590235.23 - 159246 bps
Hit
AL645949.16 - 145151 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

Short-link