<=>End overlap alignment

Alignment #1 HSP: 2000 bps / non-identical: 400 bps

Full alignment

AL158068.18	176339	GAATTCTTGGGTTTCTTGAAAAACAAAAATACAGAGATGTGTAAAGATGC	176388
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1	GAATTCTTGGGTTTCTTGAAAAACAAAAATACAGAGATGTGTAAAGATGC	50

AL158068.18	176389	ATGAAAAAATACTTAAAAATGCTCTACTTCAGTTTTCTTAAGAAAACACA	176438
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	51	ATGAAAAAATACTTAAAAATGCTCTACTTCAGTTTTCTTAAGAAAACACA	100

AL158068.18	176439	TGTAGGTGGAGAGTGGGAAAATAGACACAGAGACTGGGAAGGGCGAGCAG	176488
			||||||||||||||||||||||||||||||||||||||||||| ||||||
AL136360.21	101	TGTAGGTGGAGAGTGGGAAAATAGACACAGAGACTGGGAAGGGTGAGCAG	150

AL158068.18	176489	TGGCGGGGGGGTGGCAAAGATGAAGAGAAGCAGGCTAAAGGGTGCAAACA	176538
			|||||||| || ||||||||||||||||||||||||||||||||||||||
AL136360.21	151	TGGCGGGGCGG-GGCAAAGATGAAGAGAAGCAGGCTAAAGGGTGCAAACA	199

AL158068.18	176539	TACAGTAAAATAAAAGAAATAAATTCAGTGTTTGATAGCAGCGTAGGATG	176588
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	200	TACAGTAAAATAAAAGAAATAAATTCAGTGTTTGATAGCAGCGTAGGATG	249

AL158068.18	176589	ACTGTACTTAACAAAAAGGTATTGAACTTGAATGATGGGTGCTCTGAATA	176638
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	250	ACTGTACTTAACAAAAAGGTATTGAACTTGAATGATGGGTGCTCTGAATA	299

AL158068.18	176639	CCCTGACGTGACCACCACACATTATATACACGTAATACATTTTCTCATGT	176688
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	300	CCCTGACGTGACCACCACACATTATATACACGTAATACATTTTCTCATGT	349

AL158068.18	176689	ACCTCATACATCTGCACAAATTTTTAAAAAGGCTAAAGCACATGCCAGGA	176738
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	350	ACCTCATACATCTGCACAAATTTTTAAAAAGGCTAAAGCACATGCCAGGA	399

AL158068.18	176739	GCATCTTTAAAATAAAATGTTTAAAGGAAACCCCAATATAACCATCACCT	176788
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	400	GCATCTTTAAAATAAAATGTTTAAAGGAAACCCCAATATAACCATCACCT	449

AL158068.18	176789	GGTTCAAAGCACAGACTTTCCAGAGTCCTGTGTGCTTTCCCTATCAGAAC	176838
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	450	GGTTCAAAGCACAGACTTTCCAGAGTCCTGTGTGCTTTCCCTATCAGAAC	499

AL158068.18	176839	CCCTTTCTTGCTGCCAAAAGTAACTGCAACCCTGACTTTTGTAGCCTTTT	176888
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	500	CCCTTTCTTGCTGCCAAAAGTAACTGCAACCCTGACTTTTGTAGCCTTTT	549

AL158068.18	176889	CATCGTTGCTTTTCTTTCTAGCTTTCCCACTTCAAAGCCTAAGCAATGTA	176938
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	550	CATCGTTGCTTTTCTTTCTAGCTTTCCCACTTCAAAGCCTAAGCAATGTA	599

AL158068.18	176939	GTTTAGCTTTGCTTTTGAACTGTAAGTAAACAGTGACTTACGTGTGGCCT	176988
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	600	GTTTAGCTTTGCTTTTGAACTGTAAGTAAACAGTGACTTACGTGTGGCCT	649

AL158068.18	176989	TTTACCCAGCCTTCTACATCTCAGCTCCACCTGTGTTTCTGTGTGTCACT	177038
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	650	TTTACCCAGCCTTCTACATCTCAGCTCCACCTGTGTTTCTGTGTGTCACT	699

AL158068.18	177039	CAGTGCTGTGGAGTTTCCCGCTGTGGACTGTGCTGCCCTTGGTGTCTCTG	177088
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	700	CAGTGCTGTGGAGTTTCCCGCTGTGGACTGTGCTGCCCTTGGTGTCTCTG	749

AL158068.18	177089	TCCCACTGCCGATAGGCGTGTGGTTGTTTCCAAGTGGCAGTCGTTACAAA	177138
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	750	TCCCACTGCCGATAGGCGTGTGGTTGTTTCCAAGTGGCAGTCGTTACAAA	799

AL158068.18	177139	CCACGCTGTACCTCTGAGTGCATTCCCTGTGCCCGTGGGCACAGGTTTCT	177188
			||||||||||||||||||||||||||||||||| ||||||||||||||||
AL136360.21	800	CCACGCTGTACCTCTGAGTGCATTCCCTGTGCCTGTGGGCACAGGTTTCT	849

AL158068.18	177189	GTGGGCTGTGAGGTGACTAGTGCTGCTGGGACACAGGGAAGCTGTTGCTT	177238
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	850	GTGGGCTGTGAGGTGACTAGTGCTGCTGGGACACAGGGAAGCTGTTGCTT	899

AL158068.18	177239	AGTTTTATTCAATAACGCCCAATGGCTTCCCAGAGTCTCACCCATGAGAA	177288
			||||||||||||||| ||||||||||||||||||||||||||||||||||
AL136360.21	900	AGTTTTATTCAATAATGCCCAATGGCTTCCCAGAGTCTCACCCATGAGAA	949

AL158068.18	177289	TGCATACGGGATCCCATTCTTGCACATCCTCACTTCCCCTGGGTGCATCA	177338
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	950	TGCATACGGGATCCCATTCTTGCACATCCTCACTTCCCCTGGGTGCATCA	999

AL158068.18	177339	GACTTTTACATTGTAGCCATTTTGGTGAGGCTATAATGATATCTCATTAT	177388
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1000	GACTTTTACATTGTAGCCATTTTGGTGAGGCTATAATGATATCTCATTAT	1049

AL158068.18	177389	GAGTTTTGTTTCTATTTTCCTGATTACTAATGTCAACCAAGAAGAGGTGA	177438
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1050	GAGTTTTGTTTCTATTTTCCTGATTACTAATGTCAACCAAGAAGAGGTGA	1099

AL158068.18	177439	AAGAGCAGACTGCAAAGCAGTTAGACAAGGCATTCCTGGGGTCTTAGAAA	177488
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1100	AAGAGCAGACTGCAAAGCAGTTAGACAAGGCATTCCTGGGGTCTTAGAAA	1149

AL158068.18	177489	CTGCAATTCAGGAGACACAGGTTCAGCTAAAGGCCAATAAGTGTTCTGAA	177538
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1150	CTGCAATTCAGGAGACACAGGTTCAGCTAAAGGCCAATAAGTGTTCTGAA	1199

AL158068.18	177539	GAGAGGAAGGGGAGTTGAGATTTTTAAAAGGAAGCTAAGGGCGAATACAC	177588
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1200	GAGAGGAAGGGGAGTTGAGATTTTTAAAAGGAAGCTAAGGGCGAATACAC	1249

AL158068.18	177589	AGTTGTTGTGAAAGAATT---ATTGTTGGAGGCGGTTGGCTTAGTACATG	177635
			||||||||||||||||||   |||||||||||||||||||||||||||||
AL136360.21	1250	AGTTGTTGTGAAAGAATTATCATTGTTGGAGGCGGTTGGCTTAGTACATG	1299

AL158068.18	177636	AGTCCGTTGAGCTCATTGGTTGTCGCTCTTCAGAAGGTGCAGCACTGGCA	177685
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1300	AGTCCGTTGAGCTCATTGGTTGTCGCTCTTCAGAAGGTGCAGCACTGGCA	1349

AL158068.18	177686	AAATCTAGCTGTTTTCCAGGATGTTGTGGTCATTGCAGTTTAGCCCAGTT	177735
			|||||||||||||||||||||||||||||||||||||||| |||||||||
AL136360.21	1350	AAATCTAGCTGTTTTCCAGGATGTTGTGGTCATTGCAGTTGAGCCCAGTT	1399

AL158068.18	177736	CAGAGGTTCAATTCAAGTTCCTGTTTTTTGTTTTTGTTTTTGTTTTTCAG	177785
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1400	CAGAGGTTCAATTCAAGTTCCTGTTTTTTGTTTTTGTTTTTGTTTTTCAG	1449

AL158068.18	177786	CATTTGAGGTCATGCAGGCAGTCCTTAGAATGGCTCCCTGACTCTACTTT	177835
			||||| ||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1450	CATTTCAGGTCATGCAGGCAGTCCTTAGAATGGCTCCCTGACTCTACTTT	1499

AL158068.18	177836	AGAGCTCTGGACCAGAGTGATATCATTTTTGTATGTCACATTTCACATTA	177885
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1500	AGAGCTCTGGACCAGAGTGATATCATTTTTGTATGTCACATTTCACATTA	1549

AL158068.18	177886	GTGGGATCGATTAGCTTTTCATAGCATCATTAGCTTTTAGGAATTTCTTT	177935
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1550	GTGGGATCGATTAGCTTTTCATAGCATCATTAGCTTTTAGGAATTTCTTT	1599

AL158068.18	177936	TTGTAAAGGATCTGCTCAAGTCTTTTGCCCATTTTTATATTTTTTCTTAC	177985
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1600	TTGTAAAGGATCTGCTCAAGTCTTTTGCCCATTTTTATATTTTTTCTTAC	1649

AL158068.18	177986	TGATGTATAGGATATCCTGATGTATTCTGGATACAAGCCTGTTTCCTATA	178035
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1650	TGATGTATAGGATATCCTGATGTATTCTGGATACAAGCCTGTTTCCTATA	1699

AL158068.18	178036	CTTTCTACCTCTGTCTTGTTCTATGTGATGTTGGATCCCTTTTCTAGTCT	178085
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1700	CTTTCTACCTCTGTCTTGTTCTATGTGATGTTGGATCCCTTTTCTAGTCT	1749

AL158068.18	178086	TAATATTGTTGGAGAATTGATTCTTTCTTTCCCATTATTTTTACTTCTTT	178135
			||||||||||||||||||||||||||||||||||||||||||||| ||||
AL136360.21	1750	TAATATTGTTGGAGAATTGATTCTTTCTTTCCCATTATTTTTACTACTTT	1799

AL158068.18	178136	AAGTTTGTTTTCTTACCTTTGGGGGAGGATGCTTCTATGAGCCTAGGTAT	178185
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1800	AAGTTTGTTTTCTTACCTTTGGGGGAGGATGCTTCTATGAGCCTAGGTAT	1849

AL158068.18	178186	TTCACCATGAGGCAAAATATGTTTATTTTTATTTTTATTTTTTTGTAGAG	178235
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1850	TTCACCATGAGGCAAAATATGTTTATTTTTATTTTTATTTTTTTGTAGAG	1899

AL158068.18	178236	ATGAGGTCTCACTATGTTGCCCAGGCTGGGCTCAAACTCCTGGGCTCAAG	178285
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1900	ATGAGGTCTCACTATGTTGCCCAGGCTGGGCTCAAACTCCTGGGCTCAAG	1949

AL158068.18	178286	ACACCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATCACCGGTGTGAACC	178335
			||||||||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1950	ACACCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATCACCGGTGTGAACC	1999

AL158068.18	178336	ACC	178338
			|||
AL136360.21	2000	ACC	2002

Compact alignment

skip 100 bps 100% identity alignment

AL158068.18	176439	TGTAGGTGGAGAGTGGGAAAATAGACACAGAGACTGGGAAGGGCGAGCAG	176488
			||||||||||||||||||||||||||||||||||||||||||| ||||||
AL136360.21	101	TGTAGGTGGAGAGTGGGAAAATAGACACAGAGACTGGGAAGGGTGAGCAG	150

AL158068.18	176489	TGGCGGGGGGGTGGCAAAGATGAAGAGAAGCAGGCTAAAGGGTGCAAACA	176538
			|||||||| || ||||||||||||||||||||||||||||||||||||||
AL136360.21	151	TGGCGGGGCGG-GGCAAAGATGAAGAGAAGCAGGCTAAAGGGTGCAAACA	199

skip 600 bps 100% identity alignment

AL158068.18	177139	CCACGCTGTACCTCTGAGTGCATTCCCTGTGCCCGTGGGCACAGGTTTCT	177188
			||||||||||||||||||||||||||||||||| ||||||||||||||||
AL136360.21	800	CCACGCTGTACCTCTGAGTGCATTCCCTGTGCCTGTGGGCACAGGTTTCT	849

skip 50 bps 100% identity alignment

AL158068.18	177239	AGTTTTATTCAATAACGCCCAATGGCTTCCCAGAGTCTCACCCATGAGAA	177288
			||||||||||||||| ||||||||||||||||||||||||||||||||||
AL136360.21	900	AGTTTTATTCAATAATGCCCAATGGCTTCCCAGAGTCTCACCCATGAGAA	949

skip 300 bps 100% identity alignment

AL158068.18	177589	AGTTGTTGTGAAAGAATT---ATTGTTGGAGGCGGTTGGCTTAGTACATG	177635
			||||||||||||||||||   |||||||||||||||||||||||||||||
AL136360.21	1250	AGTTGTTGTGAAAGAATTATCATTGTTGGAGGCGGTTGGCTTAGTACATG	1299

skip 50 bps 100% identity alignment

AL158068.18	177686	AAATCTAGCTGTTTTCCAGGATGTTGTGGTCATTGCAGTTTAGCCCAGTT	177735
			|||||||||||||||||||||||||||||||||||||||| |||||||||
AL136360.21	1350	AAATCTAGCTGTTTTCCAGGATGTTGTGGTCATTGCAGTTGAGCCCAGTT	1399

skip 50 bps 100% identity alignment

AL158068.18	177786	CATTTGAGGTCATGCAGGCAGTCCTTAGAATGGCTCCCTGACTCTACTTT	177835
			||||| ||||||||||||||||||||||||||||||||||||||||||||
AL136360.21	1450	CATTTCAGGTCATGCAGGCAGTCCTTAGAATGGCTCCCTGACTCTACTTT	1499

skip 250 bps 100% identity alignment

AL158068.18	178086	TAATATTGTTGGAGAATTGATTCTTTCTTTCCCATTATTTTTACTTCTTT	178135
			||||||||||||||||||||||||||||||||||||||||||||| ||||
AL136360.21	1750	TAATATTGTTGGAGAATTGATTCTTTCTTTCCCATTATTTTTACTACTTT	1799

skip 203 bps 100% identity alignment

Overview

Query
AL158068.18 - 178338 bps
Hit
AL136360.21 - 103727 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 2000 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.6498020001763391783381120021
Short-link