<=>End overlap alignment

Alignment #1 HSP: 100 bps / non-identical: 50 bps

Full alignment

C  AL590006.4	100	GATAATATATGTTCAATCCCTATTTTCATATCAACAAGAATAATATGAGT	51
			||| ||||||||||||||||||||||||||||||||||||||||||||||
  AL035465.4	1	GATCATATATGTTCAATCCCTATTTTCATATCAACAAGAATAATATGAGT	50

C  AL590006.4	50	ATATAATTACCAGAGGTCTATCGTAATAATTTCTCTAATGTGTTTAAAGA	1
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AL035465.4	51	ATATAATTACCAGAGGTCTATCGTAATAATTTCTCTAATGTGTTTAAAGA	100

Compact alignment

C  AL590006.4	100	GATAATATATGTTCAATCCCTATTTTCATATCAACAAGAATAATATGAGT	51
			||| ||||||||||||||||||||||||||||||||||||||||||||||
  AL035465.4	1	GATCATATATGTTCAATCCCTATTTTCATATCAACAAGAATAATATGAGT	50

skip 50 bps 100% identity alignment

Overview

Query
AL590006.4 - 42689 bps
Hit
AL035465.4 - 48634 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 100 bps)
Best alignment cartoon

Alternate alignments

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