<=>End overlap alignment

Alignment #1 HSP: 217 bps / non-identical: 1400 bps

Full alignment

FO203502.1	1	AATGTTTGTGCTAACCATCGGGACACATCCCATGAGTTCTGAAGCAGTGT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AJ851868.3	1138898	AATGTTTGTGCTAACCATCGGGACACATCCCATGAGTTCTGAAGCAGTGT	1138947

FO203502.1	51	GTTGTTCTTCATGCATGGCCCTTTTGTAGAGCTGTGAGTGTAGGGGAAGA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AJ851868.3	1138948	GTTGTTCTTCATGCATGGCCCTTTTGTAGAGCTGTGAGTGTAGGGGAAGA	1138997

FO203502.1	101	G-------------------------------------------------	101
			|                                                 
AJ851868.3	1138998	GGGGGGAGAGAGNATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA	1139047

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139048	TATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT	1139097

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139098	CTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC	1139147

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139148	CGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTAC	1139197

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139198	GTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACT	1139247

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139248	GCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCT	1139297

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139298	GAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAA	1139347

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139348	CACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTG	1139397

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139398	CGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGA	1139447

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139448	ATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATT	1139497

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139498	TTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAA	1139547

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139548	ACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGA	1139597

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139598	ATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTC	1139647

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139648	ACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATG	1139697

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139698	ATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGT	1139747

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139748	AATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCAC	1139797

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139798	GTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACC	1139847

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139848	CGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAAC	1139897

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139898	GCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATG	1139947

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139948	AATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATT	1139997

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139998	GAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCG	1140047

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140048	TGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCG	1140097

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140098	CCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCC	1140147

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140148	AGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAA	1140197

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140198	AAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTG	1140247

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140248	ACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGC	1140297

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140298	ACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTAT	1140347

FO203502.1	102	GGGGGAGAGAGAGCCCGTGTCCAGCCAGAGATCCTGTGCTCTGGGCAGGC	151
			||||||||||||||||||||||||||||||||||||||||||||||||||
AJ851868.3	1140348	GGGGGAGAGAGAGCCCGTGTCCAGCCAGAGATCCTGTGCTCTGGGCAGGC	1140397

FO203502.1	152	AGACACGGGAGGACAACCGAACACTTTTCACTCGGCCTTTGGTGGGCATC	201
			||||||||||||||||| ||||||||||||||||||||||||||||||||
AJ851868.3	1140398	AGACACGGGAGGACAACGGAACACTTTTCACTCGGCCTTTGGTGGGCATC	1140447

FO203502.1	202	TGGCTGTGTGAAGTTA	217
			||||||||||||||||
AJ851868.3	1140448	TGGCTGTGTGAAGTTA	1140463

Compact alignment

skip 100 bps 100% identity alignment

FO203502.1	101	G-------------------------------------------------	101
			|                                                 
AJ851868.3	1138998	GGGGGGAGAGAGNATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA	1139047

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139048	TATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT	1139097

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139098	CTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGC	1139147

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139148	CGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTAC	1139197

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139198	GTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACT	1139247

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139248	GCATGGGCTCAGCTCCATGACGTTGCAACATTATCTGACGTGGCTCTCCT	1139297

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139298	GAAGCGGCTGCGGAATGCCGCCGACTGGTTTGGCATACTTGCCGCACAAA	1139347

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139348	CACTTGCTGTACGCGCCGCAGTTACGGGTTGTACAAGCGGAAAGAGATTG	1139397

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139398	CGTCTTGTCGATGGAACAGCAATCAGTGCGCCCGGGGGCGGCAGCGCTGA	1139447

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139448	ATGGCGACTACATATGGGATATGATCCTCATACCTGTCAGTTCACTGATT	1139497

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139498	TTGAGCTAACCGACAGCAGAGACGCTGAACGGCTGGACCGATTTGCGCAA	1139547

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139548	ACGGCAGACGAGATACGCATTGCTGACCGGGGATTCGGTTCGCGTCCCGA	1139597

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139598	ATGTATCCGCTCACTTGCTTTTGGAGAAGCTGATTATATCGTCCGGGTTC	1139647

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139648	ACTGGCGAGGATTGCGCTGGTTAACTGCAGAAGGAATGCGCTTTGACATG	1139697

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139698	ATGGGTTTTCTGCGCGGGCTGGATTGCGGTAAGAACGGTGAAACCACTGT	1139747

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139748	AATGATAGGCAATTCAGGTAATAAAAAAGCCGGAGCTCCCTTTCCGGCAC	1139797

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139798	GTCTCATTGCCGTATCACTTCCTCCCGAAAAAGCATTAATCAGTAAAACC	1139847

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139848	CGACTGCTCAGCGAGAATCGTCGAAAAGGACGAGTAGTTCAGGCGGAAAC	1139897

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139898	GCTGGAAGCAGCGGGCCATGTGCTATTGCTAACATCATTACCGGAAGATG	1139947

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139948	AATATTCAGCAGAGCAAGTGGCTGATTGTTACCGTCTGCGATGGCAAATT	1139997

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1139998	GAACTGGCTTTTAAGCGGCTCAAAAGTTTGCTGCACCTGGATGCTTTGCG	1140047

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140048	TGCAAAGGAACCTGAACTCGCGAAAGCGTGGATATTTGCTAATCTACTCG	1140097

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140098	CCGCATTTTTAATTGACGACATAATCCAGCCATCGCTGGATTTCCCCCCC	1140147

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140148	AGAAGTGCCGGATCCGAAAAGAAGAACTAACTCGTTGTGGAGAATAACAA	1140197

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140198	AAATGGTCATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTG	1140247

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140248	ACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGC	1140297

FO203502.1	102	--------------------------------------------------	101
			                                                  
AJ851868.3	1140298	ACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTAT	1140347

skip 50 bps 100% identity alignment

FO203502.1	152	AGACACGGGAGGACAACCGAACACTTTTCACTCGGCCTTTGGTGGGCATC	201
			||||||||||||||||| ||||||||||||||||||||||||||||||||
AJ851868.3	1140398	AGACACGGGAGGACAACGGAACACTTTTCACTCGGCCTTTGGTGGGCATC	1140447

skip 16 bps 100% identity alignment

Overview

Query
FO203502.1 - 217 bps
Hit
AJ851868.3 - 1593281 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 217 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.5392021712171113889811404631
Short-link