<=>End overlap alignment

Alignment #1 HSP: 202 bps / non-identical: 50 bps

Full alignment

C  KC877990.1	202	GTATATATGAAAATAAACATATGAGGGCAAAATGCACTGATCAAGTAAAT	153
			||||||||||||||| ||||||||||||||||||||||||||||||||||
  AJ271735.1	160356	GTATATATGAAAATAGACATATGAGGGCAAAATGCACTGATCAAGTAAAT	160405

C  KC877990.1	152	GAGATGCTCTATCTGGAGTGAAGAGTTTAAAATATATTTTTGGACTAGAA	103
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	160406	GAGATGCTCTATCTGGAGTGAAGAGTTTAAAATATATTTTTGGACTAGAA	160455

C  KC877990.1	102	AAATGAATTGGACCCAAATTGAAGATAATTTTAAATGTCCTGATGAAAGT	53
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	160456	AAATGAATTGGACCCAAATTGAAGATAATTTTAAATGTCCTGATGAAAGT	160505

C  KC877990.1	52	TGTTAGAAAATTAGTTGTCTATAATATATAGAATGATACTTGAAAGAGGC	3
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	160506	TGTTAGAAAATTAGTTGTCTATAATATATAGAATGATACTTGAAAGAGGC	160555

C  KC877990.1	2	AG	1
			||
  AJ271735.1	160556	AG	160557

Compact alignment

C  KC877990.1	202	GTATATATGAAAATAAACATATGAGGGCAAAATGCACTGATCAAGTAAAT	153
			||||||||||||||| ||||||||||||||||||||||||||||||||||
  AJ271735.1	160356	GTATATATGAAAATAGACATATGAGGGCAAAATGCACTGATCAAGTAAAT	160405

skip 152 bps 100% identity alignment

Overview

Query
KC877990.1 - 202 bps
Hit
AJ271735.1 - 240000 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 202 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.50502021202-11603561605571
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