<=>End overlap alignment

Alignment #1 HSP: 175 bps / non-identical: 50 bps

Full alignment

KC877988.1	1	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCAC	50
			|||||||||||||||||||||||||||||||||||||||||||||||| |
AJ271735.1	148361	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCGC	148410

KC877988.1	51	ACACCAAGGCTTAACAGAATTAGTTTGGGGAATACTCATTTTTACTCTAG	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AJ271735.1	148411	ACACCAAGGCTTAACAGAATTAGTTTGGGGAATACTCATTTTTACTCTAG	148460

KC877988.1	101	AGATTAGTTGGCTTAAACAACTTTACTCGTGAATTTTTTTCTTAATGGAG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AJ271735.1	148461	AGATTAGTTGGCTTAAACAACTTTACTCGTGAATTTTTTTCTTAATGGAG	148510

KC877988.1	151	GTGAAGACCTCCCAAAGAGGAGAAG	175
			|||||||||||||||||||||||||
AJ271735.1	148511	GTGAAGACCTCCCAAAGAGGAGAAG	148535

Compact alignment

KC877988.1	1	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCAC	50
			|||||||||||||||||||||||||||||||||||||||||||||||| |
AJ271735.1	148361	AGCTTTATAGTCTTGGATAGAAAATCATGTGTCCTTGGATGGGGATTCGC	148410

skip 125 bps 100% identity alignment

Overview

Query
KC877988.1 - 175 bps
Hit
AJ271735.1 - 240000 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 175 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.42860175117511483611485351
Short-link