<=>End overlap alignment

Alignment #1 HSP: 575 bps / non-identical: 50 bps

Full alignment

C  KC877980.1	575	AACAGTGACAGAAAGCCATTCCCATTCAATTACTTTTCAGGAACCATGCC	526
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	143865	AACAGTGACAGAAAGCCATTCCCATTCAATTACTTTTCAGGAACCATGCC	143914

C  KC877980.1	525	TAGTTAGTGTGGTGGTCTTTCTCCAGTGCATGGTGGGTAGCTAATTAACT	476
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	143915	TAGTTAGTGTGGTGGTCTTTCTCCAGTGCATGGTGGGTAGCTAATTAACT	143964

C  KC877980.1	475	ATCAGGTGTTGAGGCTGCCCCCAGTGGACATCACCTTTGGCTCTGTCACC	426
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	143965	ATCAGGTGTTGAGGCTGCCCCCAGTGGACATCACCTTTGGCTCTGTCACC	144014

C  KC877980.1	425	TTGTAGAAGCTCAAGTGTGGAAAAGAAAAGCTTAAAGAAGCCCTAACCAA	376
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144015	TTGTAGAAGCTCAAGTGTGGAAAAGAAAAGCTTAAAGAAGCCCTAACCAA	144064

C  KC877980.1	375	GCTGTATCTTCGCCATTGCATCTACTCTTTGCTGCACACACTGTGCTTGC	326
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144065	GCTGTATCTTCGCCATTGCATCTACTCTTTGCTGCACACACTGTGCTTGC	144114

C  KC877980.1	325	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACTTAAATTTCAGCAA	276
			|||||||||||||||||||||||||||||||||||| |||||||||||||
  AJ271735.1	144115	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACCTAAATTTCAGCAA	144164

C  KC877980.1	275	CAGTGAAAAACTGAGATGAAAGATGTATAATGTAGAGAACTGACTTCTCT	226
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144165	CAGTGAAAAACTGAGATGAAAGATGTATAATGTAGAGAACTGACTTCTCT	144214

C  KC877980.1	225	CTTAAAAAGTACAGAGAGCCTGTGCTGTGAACCCCCTTCAATGGGAAAAA	176
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144215	CTTAAAAAGTACAGAGAGCCTGTGCTGTGAACCCCCTTCAATGGGAAAAA	144264

C  KC877980.1	175	GCTGCAGTGGTGATGGCAGGCTCCTAAAGACTGCTGCTAAAAGACACAAG	126
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144265	GCTGCAGTGGTGATGGCAGGCTCCTAAAGACTGCTGCTAAAAGACACAAG	144314

C  KC877980.1	125	AATTATACAGTTTCCCTCTATAAGTGAATCCAAAATTCACTGACGAATTC	76
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144315	AATTATACAGTTTCCCTCTATAAGTGAATCCAAAATTCACTGACGAATTC	144364

C  KC877980.1	75	AGAGATTGAGGGCACTTGCTTGAAATCAAGGTGCTCCAACTTAGTTTAAG	26
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AJ271735.1	144365	AGAGATTGAGGGCACTTGCTTGAAATCAAGGTGCTCCAACTTAGTTTAAG	144414

C  KC877980.1	25	ACCTCCAGACTCTAACTTTATAGAT	1
			|||||||||||||||||||||||||
  AJ271735.1	144415	ACCTCCAGACTCTAACTTTATAGAT	144439

Compact alignment

skip 250 bps 100% identity alignment

C  KC877980.1	325	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACTTAAATTTCAGCAA	276
			|||||||||||||||||||||||||||||||||||| |||||||||||||
  AJ271735.1	144115	TCCTGGCTTTGTCTGCAATGGCAGCTGCCTGAGAACCTAAATTTCAGCAA	144164

skip 275 bps 100% identity alignment

Overview

Query
KC877980.1 - 575 bps
Hit
AJ271735.1 - 240000 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 575 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.826105751575-11438651444391
Short-link