<=>End overlap alignment

Alignment #1 HSP: 199 bps / non-identical: 200 bps

Full alignment

C  AJ131112.2	146433	AAAACC-GGAGTTCCCGTCGTGGCGCAGTGGTTAACGAATCTGACTAGGA	146385
			|||||| ||||||||| ||||||| ||| ||||| ||||    |||   |
  AJ251829.1	229	AAAACCAGGAGTTCCCATCGTGGCTCAGCGGTTAGCGAACACAACTCATA	278

C  AJ131112.2	146384	ACCACGAGGTTGCGGATTCGATCCCTGCCCTTGCTCAGTGGGTTAAGGAT	146335
			 ||| ||     ||| ||| ||||||| |||  |||||||||||||||||
  AJ251829.1	279	TCCATGAT----CGGGTTCTATCCCTGGCCTCACTCAGTGGGTTAAGGAT	324

C  AJ131112.2	146334	CCGGCGTTGCTGTGAGCTGTGGTGTAGGTCACAGATGCGGCTCGGATCCC	146285
			|| || ||||  |||| ||||| |||| |||||||   |||||||  || 
  AJ251829.1	325	CCAGCATTGCCATGAGTTGTGGCGTAGCTCACAGACATGGCTCGGCGCCT	374

C  AJ131112.2	146284	GCGTTGCTGTGGCTCTGGTGTAGGCCGTCGGCTCCAGCTTCTATTGGACC	146235
			|||||||||||||| |||||||||| | | |||  |||| ||||| ||||
  AJ251829.1	375	GCGTTGCTGTGGCTGTGGTGTAGGCTGGCAGCTGTAGCTCCTATTCGACC	424

Overview

Query
AJ131112.2 - 154782 bps
Hit
AJ251829.1 - 152211 bps
Total alignments
21
Best alignment
alignment #1 (HSP: 199 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
177.0463199146235146433-12294241
274.22849015527156171-146235470711
376.243821323424934381511293551306421
474.235632076440564613111306491327661
592.3823472953461394909111337851367761
691.7627173617490965271211374181410321
785.9273313037445874711384531397591
893.0617762259530035526111410191432771
986.05286435151651559911411461416111
1090.18694990170221801111422991432861
1186.857051150724867363511422991434621
1291.46439616562995691411434891441091
1386.5531675157187292388511434961486461
1482.45459952747797573011438331447721
1586.0823933992353763936711439011479011
1689.726233846571736101811440981479591
1775.643611338936779501411444551458051
1886.8423183738757017943811448801486411
1980.55571337953159665111459531472851
2090.725113437122727126163-11463411497831
2195.4610341233238652509711489121501441
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