<=>End overlap alignment

Alignment #1 HSP: 487 bps / non-identical: 50 bps

Full alignment

KC877200.1	1	TATAAAATTAGAAGTAGAAGGAAAATTTCTCAGTATGATAAAGGGCATTT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	30936	TATAAAATTAGAAGTAGAAGGAAAATTTCTCAGTATGATAAAGGGCATTT	30985

KC877200.1	51	ATGAAAAGCCACAGCCAAGACATCCAGTTTCCTGTCCAACATTATGCAAT	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	30986	ATGAAAAGCCACAGCCAAGACATCCAGTTTCCTGTCCAACATTATGCAAT	31035

KC877200.1	101	AATAGAGGGAATAAATCTCCAAGAAGACACAGCAATCCTTAATGTATATG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31036	AATAGAGGGAATAAATCTCCAAGAAGACACAGCAATCCTTAATGTATATG	31085

KC877200.1	151	CACCTGACAACAGTGTGTCAAAATACATAAGGCAAAGACTGATACAACTG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31086	CACCTGACAACAGTGTGTCAAAATACATAAGGCAAAGACTGATACAACTG	31135

KC877200.1	201	CCAGGAGGAATAGATGAGTCCACCATTAATGCTGGAGATTTTGAGTGTCT	250
			|||||||||||||||||||||||||||||||||||||||||||||| |||
AF067845.1	31136	CCAGGAGGAATAGATGAGTCCACCATTAATGCTGGAGATTTTGAGTATCT	31185

KC877200.1	251	GCTCTCAGTAATTGACAGATCCAGCAGGCAGAAATTCAGAAATTCAGCAA	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31186	GCTCTCAGTAATTGACAGATCCAGCAGGCAGAAATTCAGAAATTCAGCAA	31235

KC877200.1	301	TGACAGGGTTGAACTGAGTGATACCATCAATCAACTGAATCTGACATCTG	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31236	TGACAGGGTTGAACTGAGTGATACCATCAATCAACTGAATCTGACATCTG	31285

KC877200.1	351	TAGGCTACTTCATCCAACAGCAGCAGAACACAGATTCTTCCCAAGCTCGC	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31286	TAGGCTACTTCATCCAACAGCAGCAGAACACAGATTCTTCCCAAGCTCGC	31335

KC877200.1	401	ACAGAACATTCGCCAAGATAGGCCACATTCTGGGCCAAAAATCTAGACAC	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AF067845.1	31336	ACAGAACATTCGCCAAGATAGGCCACATTCTGGGCCAAAAATCTAGACAC	31385

KC877200.1	451	AGATCTCAACCTTTTCATAAAAGTTACCTCGACATAG	487
			|||||||||||||||||||||||||||||||||||||
AF067845.1	31386	AGATCTCAACCTTTTCATAAAAGTTACCTCGACATAG	31422

Compact alignment

skip 200 bps 100% identity alignment

KC877200.1	201	CCAGGAGGAATAGATGAGTCCACCATTAATGCTGGAGATTTTGAGTGTCT	250
			|||||||||||||||||||||||||||||||||||||||||||||| |||
AF067845.1	31136	CCAGGAGGAATAGATGAGTCCACCATTAATGCTGGAGATTTTGAGTATCT	31185

skip 237 bps 100% identity alignment

Overview

Query
KC877200.1 - 487 bps
Hit
AF067845.1 - 108932 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 487 bps)
Best alignment cartoon

Alternate alignments

Short-link