<=>End overlap alignment

Alignment #1 HSP: 643 bps / non-identical: 100 bps

Full alignment

  AL355493.14	33178	TTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCA	33227
			||||||||||||||||||||||||||||| |  |||| ||||||||||||
C  AC226171.3	642	TTTTTTTTTTTTTTTTTTTTTTTTGAGACTG--TCTCCCTCTGTCACCCA	595

  AL355493.14	33228	GCCTGGAGTGCAGTGGTGCAATCTCTACTCACTGCAGTCTCCGCCTCCCA	33277
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	594	GCCTGGAGTGCAGTGGTGCAATCTCTACTCACTGCAGTCTCCGCCTCCCA	545

  AL355493.14	33278	GGTTCAAGCTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG	33327
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	544	GGTTCAAGCTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG	495

  AL355493.14	33328	CACCTGCCACCATGCCCAGCTAATTTTTTTGTACTTTTGGTAAGACGGGG	33377
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	494	CACCTGCCACCATGCCCAGCTAATTTTTTTGTACTTTTGGTAAGACGGGG	445

  AL355493.14	33378	TTTCACCATGTGGGCCAGGCTGGTCTCAAACCCCTGACCTCAGGTGATCT	33427
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	444	TTTCACCATGTGGGCCAGGCTGGTCTCAAACCCCTGACCTCAGGTGATCT	395

  AL355493.14	33428	GCCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGAGATAAGTTAGGTTC	33477
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	394	GCCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGAGATAAGTTAGGTTC	345

  AL355493.14	33478	TTAAGAGATGTGTATTAAAAGCTCCTACTTTAATTATATTTTTATCCAAG	33527
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	344	TTAAGAGATGTGTATTAAAAGCTCCTACTTTAATTATATTTTTATCCAAG	295

  AL355493.14	33528	TTTTTTTTTTAATTGTTTAAAATGTACACATTTTACTGTGTATTATT-GT	33576
			|||||||| |||||||||||||||||||||||||||||||||||||| ||
C  AC226171.3	294	TTTTTTTTCTAATTGTTTAAAATGTACACATTTTACTGTGTATTATTGGT	245

  AL355493.14	33577	ACATACAGATTTTTTACTTATATTTTCTTCAAAAAATAGCTTTTATCTTA	33626
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	244	ACATACAGATTTTTTACTTATATTTTCTTCAAAAAATAGCTTTTATCTTA	195

  AL355493.14	33627	ACAATGATTCTATTTATTCTGATTTATACTTATAACTATTGATTTCAATT	33676
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	194	ACAATGATTCTATTTATTCTGATTTATACTTATAACTATTGATTTCAATT	145

  AL355493.14	33677	CACCTGACATTAATATTGCCATTCGTGCTTTCTTTTTGTTGAGTTTGCTT	33726
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	144	CACCTGACATTAATATTGCCATTCGTGCTTTCTTTTTGTTGAGTTTGCTT	95

  AL355493.14	33727	TGTTCTCACCTTTTTTTTACCTTTATCTACCTATCTTTATTTGTTTTAAA	33776
			||||||||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	94	TGTTCTCACCTTTTTTTTACCTTTATCTACCTATCTTTATTTGTTTTAAA	45

  AL355493.14	33777	GTGTTCTTCTTATAAAAACAAACATGGTATAAACATATTCTGAT	33820
			||||||||||||||||||||||||||||||||||||||||||||
C  AC226171.3	44	GTGTTCTTCTTATAAAAACAAACATGGTATAAACATATTCTGAT	1

Compact alignment

  AL355493.14	33178	TTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCA	33227
			||||||||||||||||||||||||||||| |  |||| ||||||||||||
C  AC226171.3	642	TTTTTTTTTTTTTTTTTTTTTTTTGAGACTG--TCTCCCTCTGTCACCCA	595

skip 300 bps 100% identity alignment

  AL355493.14	33528	TTTTTTTTTTAATTGTTTAAAATGTACACATTTTACTGTGTATTATT-GT	33576
			|||||||| |||||||||||||||||||||||||||||||||||||| ||
C  AC226171.3	294	TTTTTTTTCTAATTGTTTAAAATGTACACATTTTACTGTGTATTATTGGT	245

skip 244 bps 100% identity alignment

Overview

Query
AL355493.14 - 133954 bps
Hit
AC226171.3 - 40200 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 643 bps)
Best alignment cartoon

Alternate alignments

Short-link