<=>End overlap alignment

Alignment #1 HSP: 140 bps / non-identical: 140 bps

Full alignment

AC164088.2	228569	ACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGG	228618
			|||||||| ||||||||||||||||| ||||||||| |||||||||||||
AC154814.2	11662	ACTGACTGCTCTTCCAGAGGTCCTGAATTCAATTCCAAGCAACCACATGG	11711

AC164088.2	228619	TGGCTCACAACCATCTGTAATGGGACCTGATGCTCTCTCCTGGTGTGTCT	228668
			||||||||||||||||||||||||| || ||| ||||| |||||||||||
AC154814.2	11712	TGGCTCACAACCATCTGTAATGGGATCTAATG-TCTCTTCTGGTGTGTCT	11760

AC164088.2	228669	GAAGACAACTATAGTGTACTCACACACATACAATAAATAA	228708
			||||||| |||  ||||  |||| || |   |||||||||
AC154814.2	11761	GAAGACAGCTACTGTGTCTTCACTCATA---AATAAATAA	11797

Overview

Query
AC164088.2 - 240181 bps
Hit
AC154814.2 - 155332 bps
Total alignments
36
Best alignment
alignment #1 (HSP: 140 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
187.586140228569228708111662117971
285.08921788830188478111635118151
384.6688160202841203000111635117971
498.3141592377523833114161142191
599.1410941158135050136207117707188641
681.94347482136213136694119086196611
793.982392996899069288-119345196431
898.2540575052350579139159392151
910035469358593630-139170392151
1098.183655220691220745-148725487791
1194.7433577831978375149932499881
1282.61801784959349770-152170523531
1393.732393036898669288156133564351
1494.09315391136282136672-156143565311
1595.8912101405135273136677159239606491
1689.832072996899069288-160344606481
1781.587196188408188603-160449606481
1884.972134031386714269165941663461
1990.694486181526181611-167284673691
2091.0336792375523833-167293673701
21983450123928123977-172119721681
2296.965065188402188466-176053761181
2390.4736646898369046-176055761171
2410032547833878391-178687787401
2598.1538542378023833-186123861761
261003266210002210067-190087901521
2710032661462814693190087901521
2810030445051350556-11106411106841
2974.774921413612713634011180371182501
3097.0124026813640913667611268151270821
3193.72152706898669255-11268171270861
3297.52551606136083136688-11289661295711
3392.98229299689906928811289781292761
3498.6261265313541513606711295711302231
3596.563659237752383311357921358491
36863410618150218160711357921358911
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