<=>End overlap alignment

Alignment #1 HSP: 2049 bps / non-identical: 2106 bps

Full alignment

C  AC154403.2	3918	GGCATATAAAGTTTGTATTACCAAGGGGACTCTCTTCCCAGTGATGGCCG	3869
			||||||||||||||| |  ||||| ||| ||||||| ||| ||||||| |
  AC154622.2	72801	GGCATATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATGGCTG	72850

C  AC154403.2	3868	ACTAGGCTATCTTCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGG	3819
			||| ||| ||||| || ||||||||||||||||| ||  |||||  ||||
  AC154622.2	72851	ACTCGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTC-CGGGG	72899

C  AC154403.2	3818	TACCAGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTT	3769
			||   ||||||||||| |||||||||||||||||||||||||| ||||||
  AC154622.2	72900	TATTGGTTAGTTCATACTGTTGTTCCACCTATAGGGTTGCAGACCCCTTT	72949

C  AC154403.2	3768	AGCTCCTTGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGTTCCA	3719
			||||||||||||||||||||||||| ||||||||||||||||||| ||||
  AC154622.2	72950	AGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCA	72999

C  AC154403.2	3718	TCCAATAG----CTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCA	3673
			||||||||    |||||||||||||||||||| ||||| | |||| ||||
  AC154622.2	73000	TCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAAGCACAGGCA	73049

C  AC154403.2	3672	CAGCCTCATACTAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTTCT	3623
			 ||||||| |  ||||||||||||  |||| |||||||||||||||| ||
  AC154622.2	73050	TAGCCTCACAAGAGACAGCTATATTTGGGTACTTTCAGCAAAATCTTGCT	73099

C  AC154403.2	3622	GGCATATACAATAATGTCTGCGTTTGGTGGCTGATTATGGGATGGATCCC	3573
			 |  ||| ||||  |||| |||||||| ||||||||||||| ||||||| 
  AC154622.2	73100	AGTGTATGCAATGGTGTCAGCGTTTGGAGGCTGATTATGGGGTGGATCC-	73148

C  AC154403.2	3572	CAGATGGGGTAGTCTCTGGATACTCCATCCTTTCCTCTTAGCTCCAAACT	3523
			               ||||||     ||       ||   | ||||||||
  AC154622.2	73149	---------------CTGGAT-----AT------GTCAGTGATCCAAACT	73172

C  AC154403.2	3522	TTGACTCTGTATCTCCTTTCATGGGTATTTTCTTCCCAATTCTAAGGAGG	3473
			||| ||||||| |||||| ||||||| |||| |||| ||||||||| |||
  AC154622.2	73173	TTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCTAATTCTAAGAAGG	73222

C  AC154403.2	3472	AATGAAGTATCCAAACGTTGGTCTTCCCTCTTCTTGATTTTCTTGTGTTT	3423
			 |  | || |||| || |||||||||| ||||||||| |||| |||||||
  AC154622.2	73223	GACAAGGTGTCCACACTTTGGTCTTCCTTCTTCTTGAGTTTCATGTGTTT	73272

C  AC154403.2	3422	TGAAAA-------TTGTATCTTGGGTATTCTATGTTTCTGAGCTAATATC	3380
			|| |||       ||||||||||||||||||| ||||||| |||||||| 
  AC154622.2	73273	TGCAAATTGGATCTTGTATCTTGGGTATTCTAAGTTTCTGGGCTAATATG	73322

C  AC154403.2	3379	CACTTATTAGTGAATGCATATCTAATGACTTCTTTTGTGAGTGGGTTACC	3330
			||||||| | ||| | || |||   ||| ||||||||||| |||||||||
  AC154622.2	73323	CACTTATCATTGAGTACACATCATGTGAGTTCTTTTGTGATTGGGTTACC	73372

C  AC154403.2	3329	TCACTCAGGATGATATCCCT-CAGATACATCCATTTGTCCAAGAATTTCC	3281
			||||||||||||||  |||| ||| | |||||||||| | ||||||||| 
  AC154622.2	73373	TCACTCAGGATGAT-GCCCTCCAGGTCCATCCATTTGCCTAAGAATTTCA	73421

C  AC154403.2	3280	TAAATCCATTGT--------GCTGAGTAGTACTCCATTGTGCAAATGTAC	3239
			||||| |||| |        ||||||||||||||||||||| ||||||||
  AC154622.2	73422	TAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTAC	73471

C  AC154403.2	3238	CACATTTTCTGTATCCATTCTTCTGTTGAGGGACATCTGGGTTCTTTCCA	3189
			||||||||||||| |||||| |||||||||||  | | ||||||||||||
  AC154622.2	73472	CACATTTTCTGTAACCATTCCTCTGTTGAGGGGTACCAGGGTTCTTTCCA	73521

C  AC154403.2	3188	GCTTCTGGCTACTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGT	3139
			 |||||||||| |||||||| |||||| ||||||||||||||||||||||
  AC154622.2	73522	ACTTCTGGCTATTATAAATAGGGCTGCAATGAACATAGTGGAGCATGTGT	73571

C  AC154403.2	3138	TCTTATTACCAGTTGGAACTTCTTCTGGGTATATGCCCGGGAAAGGTGTT	3089
			 ||| |||||||||||||  | |||||| ||||||||| ||| |||| ||
  AC154622.2	73572	CCTTCTTACCAGTTGGAATATTTTCTGGATATATGCCCAGGAGAGGTATT	73621

C  AC154403.2	3088	GCTGGATCTTCCAGTAGTATTATGTCCAATTTTCTGAGGAACCTCCAGAC	3039
			|||||||| ||| |||||| ||||||||||||||||||||||| ||||||
  AC154622.2	73622	GCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGAC	73671

C  AC154403.2	3038	TGACTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACGAGCAATGGAGGA	2989
			||| ||||||||||||||||||||||||||||||||| | ||||||||||
  AC154622.2	73672	TGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGA	73721

C  AC154403.2	2988	GTTTTCTTCTTTCTCCACATCCTTGCCAGTATCTGCTGTCACCTGAATTT	2939
			|| ||| ||||||| ||||||||  |||| |||||||||||| |||||||
  AC154622.2	73722	GTGTTCCTCTTTCTTCACATCCTCACCAGCATCTGCTGTCACATGAATTT	73771

C  AC154403.2	2938	TTGATCTTAGCCATTCTGACTGGTATGAGATGAAATCTCAAGGTTGTTTT	2889
			|||||||||||||||||||||||| |||| || ||  ||| |||||||||
  AC154622.2	73772	TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAA--TCAGGGTTGTTTT	73819

C  AC154403.2	2888	GATTTGCATTTCCCTGATGATTAAGGATGTTGAACA-TTTTTCAGGTGCT	2840
			||||||||||||||||||||||||||||| |||||| |||||||||||||
  AC154622.2	73820	GATTTGCATTTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCT	73869

C  AC154403.2	2839	TCTCAGGCATTCAGTATTCTTCAGTTGAGCATTCTTTGTTTAGCTCTGTA	2790
			|||||| | ||  |||||| ||||||||| ||||||||||||| ||||  
  AC154622.2	73870	TCTCAGCCCTTTGGTATTCCTCAGTTGAGAATTCTTTGTTTAGTTCTGAG	73919

C  AC154403.2	2789	CCACATTTTTTAATGGGGTTATTTTAATTTCCGGAGTCCAGCTTCTTGAG	2740
			|| |||||||||| |||||||||| | |||| |||||||| |||||||| 
  AC154622.2	73920	CCCCATTTTTTAAAGGGGTTATTTGATTTTCTGGAGTCCAACTTCTTGAA	73969

C  AC154403.2	2739	CTCTTTGTATATACGGGATATTAGTCCCCTATCAGATTTAGAATTGGTAA	2690
			|||||||||||||  ||||||||||||||| |||||||||| | ||||||
  AC154622.2	73970	CTCTTTGTATATATTGGATATTAGTCCCCTGTCAGATTTAGGACTGGTAA	74019

C  AC154403.2	2689	AAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCT	2640
			||||||||| ||||||||||||||||||||||||||||||||||||||||
  AC154622.2	74020	AAATCCTTTTCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCT	74069

C  AC154403.2	2639	TTTGCCTTACAGAAGCTGTGCAATTTTTTGAGGTCCCATTTGTCAATTCT	2590
			||||||||| ||||||| ||||||||| ||||||| ||||| || ||| |
  AC154622.2	74070	TTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCACATTTATCGATTTT	74119

C  AC154403.2	2589	TGATCCTACAGCACAAGCCATTGCTATTCTGTTTAGGAATTTTTCCCCTG	2540
			 |||| |||||||||||||| ||||  |||||| ||||||||||||||||
  AC154622.2	74120	CGATCTTACAGCACAAGCCAATGCTGCTCTGTTCAGGAATTTTTCCCCTG	74169

C  AC154403.2	2539	TGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATTAATTTCAGT	2490
			||||||||||||  ||||||| ||||||| |||||||||| | ||||| |
  AC154622.2	74170	TGCCCATATCTTCAAGGCTTTCCCCCACTCTCTCCTCTATAAGTTTCACT	74219

C  AC154403.2	2489	GTCTCTCATTTTATGTGGAGGTCTTTGATCCATTTAGACTTGAGCTTTGT	2440
			||||||  |||||||||||| || |||||||| ||||| |||| ||| ||
  AC154622.2	74220	GTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGT	74269

C  AC154403.2	2439	ACAAGGAGATAAGAATGGATCAAATCGCATTCTTCTACGTGATAACTGCC	2390
			||||||||||| ||||||||||| |||||||||||||| |||||||||||
  AC154622.2	74270	ACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGATAACTGCC	74319

C  AC154403.2	2389	AGTTATGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATG	2340
			|||| |||||||||||||||||||||||||||||||||| ||||||||||
  AC154622.2	74320	AGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTCCCACTGGATG	74369

C  AC154403.2	2339	GTTTTAGCTCCCTTGTCAAAGTTCAAGGGACCATAGGTGTGTAGATTCAT	2290
			||||||||||||||||||||| ||||| |||||||||||||| | |||||
  AC154622.2	74370	GTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCAT	74419

C  AC154403.2	2289	TTCTGGGTCTTCAATTCTATTCCATAGATCTACCTGTCTGTCACTGTACC	2240
			|||||||||||||||| |||||||| | ||||| ||||||||||| ||||
  AC154622.2	74420	TTCTGGGTCTTCAATTTTATTCCATTGGTCTACTTGTCTGTCACTATACC	74469

C  AC154403.2	2239	AGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCATAATGTCA	2190
			||||||||||||||||||||||||||| ||||||||||||| | | ||||
  AC154622.2	74470	AGTACCATGCAGTTTTTATCACAATTGTTCTGTAGTACAGCTTTAGGTCA	74519

C  AC154403.2	2189	GGCATGGTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATAGTTTTTGC	2140
			||||||||||||||||||||| |||||||||  ||||||| |||||||||
  AC154622.2	74520	GGCATGGTGATTCCACCAGAGATTCTTTTATCATTGAGAAGAGTTTTTGC	74569

C  AC154403.2	2139	TATCCTAGGTTCTTTATTATTCCAGATAAATTTGCA--------------	2104
			||||||||||| ||| ||||||||||| || |||||              
  AC154622.2	74570	TATCCTAGGTTTTTTGTTATTCCAGATGAAGTTGCAGATTGCCCTTTCTA	74619

C  AC154403.2	2103	---------------GAGTTGGAATTTTGATGGGGATTGCATTGAATCTA	2069
			               |||||||||||||||||||||||||||||||||| 
  AC154622.2	74620	ATCAGTTGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTG	74669

C  AC154403.2	2068	TAGATTGCTTTCGGCAGGATAGCCATTTTGACTATATTAGTCCTGCCAAT	2019
			||||||||||| ||||  ||||||||||| ||||||||  ||||||||||
  AC154622.2	74670	TAGATTGCTTTTGGCA-TATAGCCATTTTTACTATATTGATCCTGCCAAT	74718

C  AC154403.2	2018	CCATGAGTATGGTAGATCTTTCCTTCTTCTGAGATCTTCTTCAATTTCTT	1969
			||||||| |||| |||||||||| ||||||||| ||||||| ||||||||
  AC154622.2	74719	CCATGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCTTTAATTTCTT	74768

C  AC154403.2	1968	TCTTAAGAGACTTGAAGTTCTTATCATACAGATCTTTCATTTCC----TT	1923
			|||| |||||||||||||||||||||||||||||||||| ||||    ||
  AC154622.2	74769	TCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTAATT	74818

C  AC154403.2	1922	AGA--AATACCAATGTA-TTTACATTATTTGTAACTATTGTGAAGGGTGT	1876
			|||   | ||||| ||| |||| | ||||||| |||||||||||||||||
  AC154622.2	74819	AGAGTCACACCAAGGTATTTTATAGTATTTGTGACTATTGTGAAGGGTGT	74868

C  AC154403.2	1875	TCTTTC	1870
			| ||||
  AC154622.2	74869	TGTTTC	74874

Overview

Query
AC154403.2 - 131387 bps
Hit
AC154622.2 - 189631 bps
Total alignments
20
Best alignment
alignment #1 (HSP: 2049 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
184.961161204918703918-172801748741
277.3722469228063497116761
381.452805914191242502-115661
489.936269524189342844112992139441
589.261694424643407-112992139441
682.942614694282743295114205147141
785.9436763834214058114716153481
881.772726244124741870-114718153481
986.94254395115544115938-115449158311
1081.853478554419945053-126794276361
1176.7932010964569646791144133451621
1296.24375004124141740-170999714981
1389.53262638574126745123172729765301
1495.35793934412474218011000181009411
1583.0442285631273982-11000691009411
1696.42707809412414204911082851090931
1780.8829369732713967-11083671090721
1889.192443734124741619-11154751158441
1983.332304333626405811174501178691
2082.17274594412694186211786511792501
Short-link