<=>End overlap alignment

Alignment #1 HSP: 338 bps / non-identical: 338 bps

Full alignment

C  AC149156.3	3001	TAGGGAAGGCAGAGTATGGCACACACAGGCAGGGTAGGGAAGGCAGAGTA	2952
			||||| |||| ||||||||  |||||||||||  ||||| |||| |||||
  AC149539.2	23425	TAGGGCAGGCCGAGTATGG--CACACAGGCAGCATAGGGCAGGCCGAGTA	23472

C  AC149156.3	2951	TGGCACACACAGGCAGGGTAGGGAAGGCAGAGTATGGCACACACAGGCAG	2902
			||||||||||||||||  ||||| |||| |||||||||||||||||||||
  AC149539.2	23473	TGGCACACACAGGCAGCATAGGGCAGGCCGAGTATGGCACACACAGGCAG	23522

C  AC149156.3	2901	GGTAGGGAAGGCAGAGTATGGCACACACAGGCAGGGTAGGGAAGGCAGAG	2852
			  ||||| |||| |||||||||||||||||||||  ||||| |||| |||
  AC149539.2	23523	CATAGGGCAGGCCGAGTATGGCACACACAGGCAGCATAGGGCAGGCCGAG	23572

C  AC149156.3	2851	TATGGCACACATAGGCAGGGTAGGGAAGGCAGAGTATGGCACACACAGGC	2802
			||||||||||| ||||||  ||||| |||| |||||||||||||||||||
  AC149539.2	23573	TATGGCACACACAGGCAGCATAGGGCAGGCCGAGTATGGCACACACAGGC	23622

C  AC149156.3	2801	AGGGTAGGGAAGGCAGAGTATGGCACACACAGGCAGGGTAGGGCAGGCAG	2752
			||  ||||| |||| |||||||||||||||||||||  |||||||||| |
  AC149539.2	23623	AGCATAGGGCAGGCCGAGTATGGCACACACAGGCAGCATAGGGCAGGCCG	23672

C  AC149156.3	2751	AGTATGGCACACAGAGGCAGGGTAGGGCAGGCAGGGTAGGGCAGGCAGAG	2702
			|||||||||||||              |||||||  |||||||||| |||
  AC149539.2	23673	AGTATGGCACACA--------------CAGGCAGCATAGGGCAGGCCGAG	23708

C  AC149156.3	2701	TATGGCACACACAGGCAGCATAGGGCAGGCAGAATATG	2664
			||||||||||||||| ||||||| ||||||||| ||||
  AC149539.2	23709	TATGGCACACACAGGAAGCATAGAGCAGGCAGAGTATG	23746

Overview

Query
AC149156.3 - 70067 bps
Hit
AC149539.2 - 61561 bps
Total alignments
21
Best alignment
alignment #1 (HSP: 338 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
183.8517133826643001-123425237461
281.791333265739757722-117971182941
384.82244152492025334120804212241
477.119855340014553123210237461
572.731985485852859075-124694251771
696.168774883348909-124700247761
778.29691664841048575-125005251791
887.42931596408964247-132873330311
991.425086763922739902153346540331
1073.16422573936239618153921541921
1171.06362453981440058155621558551
1287.195709014009840998155623565111
1387.550804066540744155625557041
1490.1641614160541665155625556851
1577.022055544056941122155813563431
1669.91833984126841665155813562441
1780.574748264107441899155871568121
1874.1739811824193243113156017571431
1978.891544194029940717156078565131
2085.42551004134241441156534566291
2188.81822604207742336156545568121
Short-link