<=>End overlap alignment

Alignment #1 HSP: 103 bps / non-identical: 0 bps

Full alignment

CU062623.4	1	AAGCTTGGTTTGGTGGTTACCACTCTCCGTCGCTCCACACATCATTATTC	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC145027.17	4165	AAGCTTGGTTTGGTGGTTACCACTCTCCGTCGCTCCACACATCATTATTC	4214

CU062623.4	51	TTTGTATTGGTGTGGTTCGATCCGGACCTTGGAGGTTCGGGGATTCACAA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC145027.17	4215	TTTGTATTGGTGTGGTTCGATCCGGACCTTGGAGGTTCGGGGATTCACAA	4264

CU062623.4	101	CAA	103
			|||
AC145027.17	4265	CAA	4267

Overview

Query
CU062623.4 - 64901 bps
Hit
AC145027.17 - 122014 bps
Total alignments
21
Best alignment
alignment #1 (HSP: 103 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
110010210311031416542671
299.3361672646442586490111646471
379.0615572045248045241120681
498.7422122325123251196642671
580.4777118826301664897113095149841
685.98112920342489026923113099151451
785.615369842676927752115132161111
883.2493118946300864901124621265121
985.85113920471335615402124633266661
1085.675409801538916368126512274951
1195.136016993674737445130490311661
1295.286026773074731423136491371891
1384.75202137882487828665162755665421
1480.7986620521335215403162763648021
1575.95551435953710971171360727661
1673.8954613453872040064172897742631
1790.58171231598666109611162711174811
1895.898501081612886236811174781185481
1986.7215852547623556490111194471219611
2081.468351943248802682211200681220141
2185.8311031950133521530111200741220141
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