<=>End overlap alignment

Alignment #1 HSP: 564 bps / non-identical: 50 bps

Full alignment

KC877196.1	1	TGAGCACAGGGGTTTTTGGGTGAAGTGATTCAGAGTCTACTTCCTGGTGA	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116375	TGAGCACAGGGGTTTTTGGGTGAAGTGATTCAGAGTCTACTTCCTGGTGA	116424

KC877196.1	51	CCTTTCTGAGCCCCCTTGCTTTGATTTTAGTAATGGGTTAGCAGTGTCCA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116425	CCTTTCTGAGCCCCCTTGCTTTGATTTTAGTAATGGGTTAGCAGTGTCCA	116474

KC877196.1	101	CCGTCAACACTGTTGTGAGGCTTGGGGGTCTTCAAAGTAAACCATTTTCC	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116475	CCGTCAACACTGTTGTGAGGCTTGGGGGTCTTCAAAGTAAACCATTTTCC	116524

KC877196.1	151	GAGTGCTGGGCGCACAGCCAGGACACACAGTGAGGACTGGCTGTAATTAC	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116525	GAGTGCTGGGCGCACAGCCAGGACACACAGTGAGGACTGGCTGTAATTAC	116574

KC877196.1	201	TGTGTTATTGTCGGCTTTATCAGGTCCCAGGCCAAAACAGTCCCGTGCTG	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116575	TGTGTTATTGTCGGCTTTATCAGGTCCCAGGCCAAAACAGTCCCGTGCTG	116624

KC877196.1	251	GAGAAGAAAGCTCTACTGAGGCTCTACTCTTAAATGTCTTTTTCTTTTTG	300
			|||||||||||||||||||||||||| |||||||||||||||||||||||
AC129915.6	116625	GAGAAGAAAGCTCTACTGAGGCTCTATTCTTAAATGTCTTTTTCTTTTTG	116674

KC877196.1	301	TAACATAAAAACCTTCTAATTCTAGAATGCAAAGTAAATAGGTAATAAAG	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116675	TAACATAAAAACCTTCTAATTCTAGAATGCAAAGTAAATAGGTAATAAAG	116724

KC877196.1	351	CAATTGCATGCATTAGGAAGAGCTTATTTATTTTTCAGTGTGGGCCAAGC	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116725	CAATTGCATGCATTAGGAAGAGCTTATTTATTTTTCAGTGTGGGCCAAGC	116774

KC877196.1	401	TTGAGATGTCTAAGAAATGTTTGCGGAGTGAATGCATGCTCTTCCCTAGA	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116775	TTGAGATGTCTAAGAAATGTTTGCGGAGTGAATGCATGCTCTTCCCTAGA	116824

KC877196.1	451	GAACAGGCTCTGGGTGAATTTGACACCAAAACTATCTAACAATTTTAGAG	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116825	GAACAGGCTCTGGGTGAATTTGACACCAAAACTATCTAACAATTTTAGAG	116874

KC877196.1	501	AACTGAATATTTTAAAAACAAAATTAATGATTTTTTTAAGGAATCAAGAT	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	116875	AACTGAATATTTTAAAAACAAAATTAATGATTTTTTTAAGGAATCAAGAT	116924

KC877196.1	551	CTACATGCTAAATG	564
			||||||||||||||
AC129915.6	116925	CTACATGCTAAATG	116938

Compact alignment

skip 250 bps 100% identity alignment

KC877196.1	251	GAGAAGAAAGCTCTACTGAGGCTCTACTCTTAAATGTCTTTTTCTTTTTG	300
			|||||||||||||||||||||||||| |||||||||||||||||||||||
AC129915.6	116625	GAGAAGAAAGCTCTACTGAGGCTCTATTCTTAAATGTCTTTTTCTTTTTG	116674

skip 264 bps 100% identity alignment

Overview

Query
KC877196.1 - 564 bps
Hit
AC129915.6 - 162359 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 564 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.82270564156411163751169381
Short-link