<=>End overlap alignment

Alignment #1 HSP: 547 bps / non-identical: 50 bps

Full alignment

C  KC877191.1	547	CACAGGCAGGGTCCCTGGAAGAGGTGGCATTTAGCTTTGGCCTCGAAAGA	498
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73470	CACAGGCAGGGTCCCTGGAAGAGGTGGCATTTAGCTTTGGCCTCGAAAGA	73519

C  KC877191.1	497	TGGCTGGGGGATCATTAGCTTCTGTAGGAACAAACCCCATAGATGTTGCA	448
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73520	TGGCTGGGGGATCATTAGCTTCTGTAGGAACAAACCCCATAGATGTTGCA	73569

C  KC877191.1	447	TTGGCCTAGTAGGGGGGCAGTTTGTTTTTTCTGGTTGGCCTGGTCATCAG	398
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73570	TTGGCCTAGTAGGGGGGCAGTTTGTTTTTTCTGGTTGGCCTGGTCATCAG	73619

C  KC877191.1	397	AATAACTCATCTGGGTAATACAGGGAGGGGTTTTCTAGGGGCTCGGTTAC	348
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73620	AATAACTCATCTGGGTAATACAGGGAGGGGTTTTCTAGGGGCTCGGTTAC	73669

C  KC877191.1	347	ACACACTGGACTTGTTTTTAACATATAAGAGAGGCTGGGAGCATTTCTGA	298
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73670	ACACACTGGACTTGTTTTTAACATATAAGAGAGGCTGGGAGCATTTCTGA	73719

C  KC877191.1	297	AAAATGGCCTATAGAAACACAGGGCAATGACAACCTGTAAGGAGGATAGA	248
			||||||||||||||||||||| ||||||||||||||||||||||||||||
  AC129915.6	73720	AAAATGGCCTATAGAAACACACGGCAATGACAACCTGTAAGGAGGATAGA	73769

C  KC877191.1	247	ACTGGCTGCAATCCATACCTGTAATATTCAAACTCATTATTAATCTTCCC	198
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73770	ACTGGCTGCAATCCATACCTGTAATATTCAAACTCATTATTAATCTTCCC	73819

C  KC877191.1	197	CCAAATGTCTATATAGAGAACCAGGTGATATCCAGGTTAAGCAAATATTC	148
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73820	CCAAATGTCTATATAGAGAACCAGGTGATATCCAGGTTAAGCAAATATTC	73869

C  KC877191.1	147	AAGAGAAATGTAAATGTGACCTTCCTTAATTAACAAATTTGCTAACATTT	98
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73870	AAGAGAAATGTAAATGTGACCTTCCTTAATTAACAAATTTGCTAACATTT	73919

C  KC877191.1	97	CTCATCACTGCGGAGTTGCTGTAGGATGTTCAGCTGCCCCTTGAATTTAC	48
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73920	CTCATCACTGCGGAGTTGCTGTAGGATGTTCAGCTGCCCCTTGAATTTAC	73969

C  KC877191.1	47	ATGTGGAGTAACAAACAAGGAAGCATATGTAATGTGCTTTGCCGTTT	1
			|||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	73970	ATGTGGAGTAACAAACAAGGAAGCATATGTAATGTGCTTTGCCGTTT	74016

Compact alignment

skip 250 bps 100% identity alignment

C  KC877191.1	297	AAAATGGCCTATAGAAACACAGGGCAATGACAACCTGTAAGGAGGATAGA	248
			||||||||||||||||||||| ||||||||||||||||||||||||||||
  AC129915.6	73720	AAAATGGCCTATAGAAACACACGGCAATGACAACCTGTAAGGAGGATAGA	73769

skip 247 bps 100% identity alignment

Overview

Query
KC877191.1 - 547 bps
Hit
AC129915.6 - 162359 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 547 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.817205471547-173470740161
Short-link