<=>End overlap alignment

Alignment #1 HSP: 560 bps / non-identical: 50 bps

Full alignment

KC877190.1	1	TATCAATGTTAGGATGGAGGCCTGTTCTACTTCTATAATTTTAACGTCTT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70199	TATCAATGTTAGGATGGAGGCCTGTTCTACTTCTATAATTTTAACGTCTT	70248

KC877190.1	51	CGAAGACACAGACACCTTCTTCCCGTGACTTGCTCAGAGGCTTCCCCAAC	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70249	CGAAGACACAGACACCTTCTTCCCGTGACTTGCTCAGAGGCTTCCCCAAC	70298

KC877190.1	101	CAGTGCCACCTGGGTAGGAACATTTGGTCAGCGGCCACTGTTGGAATGTT	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70299	CAGTGCCACCTGGGTAGGAACATTTGGTCAGCGGCCACTGTTGGAATGTT	70348

KC877190.1	151	TCTTTCTAAACACCCTGCTTAACGTCACACGGGAATACAATTTACCCTTT	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70349	TCTTTCTAAACACCCTGCTTAACGTCACACGGGAATACAATTTACCCTTT	70398

KC877190.1	201	TATCCTTTATTTGTAAAAATTTATTGTGCTTTCCTTGCAATAGATAAATA	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70399	TATCCTTTATTTGTAAAAATTTATTGTGCTTTCCTTGCAATAGATAAATA	70448

KC877190.1	251	TTGTTTATGTTATAAAAGGTAGGGCGTATACAAAAAGAAAATATTCAGTT	300
			||||||||||||||||||||| ||||||||||||||||||||||||||||
AC129915.6	70449	TTGTTTATGTTATAAAAGGTAAGGCGTATACAAAAAGAAAATATTCAGTT	70498

KC877190.1	301	ATTCCATATTCCTCCACTCTGAAATAACCACTATTGACAGTGTGCTGGAT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70499	ATTCCATATTCCTCCACTCTGAAATAACCACTATTGACAGTGTGCTGGAT	70548

KC877190.1	351	TTACTTTCAGGACACACACAAGCAGAGACATCCTTCCATGAATACAGACC	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70549	TTACTTTCAGGACACACACAAGCAGAGACATCCTTCCATGAATACAGACC	70598

KC877190.1	401	CATGCATGCGTGGATACAGACACAGGCACATATGAATGGAGGCACAGACA	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70599	CATGCATGCGTGGATACAGACACAGGCACATATGAATGGAGGCACAGACA	70648

KC877190.1	451	TACATGAACAGAGACACACAGACGGTGCATAGACACAGGCACATGCACAC	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70649	TACATGAACAGAGACACACAGACGGTGCATAGACACAGGCACATGCACAC	70698

KC877190.1	501	ATGAGTGCAGGCAGTAACAGGTGTGCATACGTGTACACATATGCATAGGC	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC129915.6	70699	ATGAGTGCAGGCAGTAACAGGTGTGCATACGTGTACACATATGCATAGGC	70748

KC877190.1	551	AGTCACATGT	560
			||||||||||
AC129915.6	70749	AGTCACATGT	70758

Compact alignment

skip 250 bps 100% identity alignment

KC877190.1	251	TTGTTTATGTTATAAAAGGTAGGGCGTATACAAAAAGAAAATATTCAGTT	300
			||||||||||||||||||||| ||||||||||||||||||||||||||||
AC129915.6	70449	TTGTTTATGTTATAAAAGGTAAGGCGTATACAAAAAGAAAATATTCAGTT	70498

skip 260 bps 100% identity alignment

Overview

Query
KC877190.1 - 560 bps
Hit
AC129915.6 - 162359 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 560 bps)
Best alignment cartoon

Alternate alignments

Short-link