<=>End overlap alignment

Alignment #1 HSP: 560 bps / non-identical: 50 bps

Full alignment

C  KC877185.1	560	TATGTGGTGGGACCGTTTTTGAATCTGAACTAAATTAAATGATGGAAAAC	511
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139651	TATGTGGTGGGACCGTTTTTGAATCTGAACTAAATTAAATGATGGAAAAC	139700

C  KC877185.1	510	GACCTTGGGTGAGTTCTTCATGGCTGTACTTCCTGGAATGATACAATTTT	461
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139701	GACCTTGGGTGAGTTCTTCATGGCTGTACTTCCTGGAATGATACAATTTT	139750

C  KC877185.1	460	TCAAAATAATTTGTTTCCTCGAAATGACACCAACACCTATAGTTAAGTTT	411
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139751	TCAAAATAATTTGTTTCCTCGAAATGACACCAACACCTATAGTTAAGTTT	139800

C  KC877185.1	410	AAATTTATGGGACTAGGTGAGTGTTATTTTGTGAGACATAGCATTATGCT	361
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139801	AAATTTATGGGACTAGGTGAGTGTTATTTTGTGAGACATAGCATTATGCT	139850

C  KC877185.1	360	TACATAGAATAATTTATCGTTTGATGTTCAATATCATTTTATTTAAGCAT	311
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139851	TACATAGAATAATTTATCGTTTGATGTTCAATATCATTTTATTTAAGCAT	139900

C  KC877185.1	310	AACTGTGGAGAACCATTCAAGTGACTGTATAATTACTTCATATAAATACT	261
			||||||||||||||||| ||||||||||||||||||||||||||||||||
  AC129915.6	139901	AACTGTGGAGAACCATTGAAGTGACTGTATAATTACTTCATATAAATACT	139950

C  KC877185.1	260	TAATAGACAACTTTACCATTAACTATTTTCCTACTACTTTATAACCGATT	211
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	139951	TAATAGACAACTTTACCATTAACTATTTTCCTACTACTTTATAACCGATT	140000

C  KC877185.1	210	CTATTTTCAATTGATAAGTGATTTTTTCCCATTTAAGTACTGATTTGCAG	161
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	140001	CTATTTTCAATTGATAAGTGATTTTTTCCCATTTAAGTACTGATTTGCAG	140050

C  KC877185.1	160	TTTGGCCCATATTATTTTGCACTGAGATGGCATAAATGCCACATCCTTCC	111
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	140051	TTTGGCCCATATTATTTTGCACTGAGATGGCATAAATGCCACATCCTTCC	140100

C  KC877185.1	110	CGCACTTAAGGCATGCAATTTGCAGAATAAGACGTAAATTTTAAGTAGGT	61
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	140101	CGCACTTAAGGCATGCAATTTGCAGAATAAGACGTAAATTTTAAGTAGGT	140150

C  KC877185.1	60	TTGGAATCTTTTGTAGGACTACTTTTATTTCAGCCTTTGACATAATATAA	11
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	140151	TTGGAATCTTTTGTAGGACTACTTTTATTTCAGCCTTTGACATAATATAA	140200

C  KC877185.1	10	GCTTGTTAAT	1
			||||||||||
  AC129915.6	140201	GCTTGTTAAT	140210

Compact alignment

skip 250 bps 100% identity alignment

C  KC877185.1	310	AACTGTGGAGAACCATTCAAGTGACTGTATAATTACTTCATATAAATACT	261
			||||||||||||||||| ||||||||||||||||||||||||||||||||
  AC129915.6	139901	AACTGTGGAGAACCATTGAAGTGACTGTATAATTACTTCATATAAATACT	139950

skip 260 bps 100% identity alignment

Overview

Query
KC877185.1 - 560 bps
Hit
AC129915.6 - 162359 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 560 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.821405601560-11396511402101
Short-link