<=>End overlap alignment

Alignment #1 HSP: 548 bps / non-identical: 50 bps

Full alignment

C  KC877183.1	548	TAATTGACAGCATGCATTCAGGTTGCTCCCCAGAGCAGGCAGTGACCTTC	499
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	144838	TAATTGACAGCATGCATTCAGGTTGCTCCCCAGAGCAGGCAGTGACCTTC	144887

C  KC877183.1	498	TTTTCCTTGCCTGTTTTTGGAGGAAGTGAGAGCGTGGTATTCTTAAAAAA	449
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	144888	TTTTCCTTGCCTGTTTTTGGAGGAAGTGAGAGCGTGGTATTCTTAAAAAA	144937

C  KC877183.1	448	AATTCAGCCCTTCATTTTCCCTGTATGCAGACCAAACAGCACTGTCCTGG	399
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	144938	AATTCAGCCCTTCATTTTCCCTGTATGCAGACCAAACAGCACTGTCCTGG	144987

C  KC877183.1	398	CACCGTGAATGTTTCTCATGCATATCGTTTCCCCAGAGTTTAACGCCAAT	349
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	144988	CACCGTGAATGTTTCTCATGCATATCGTTTCCCCAGAGTTTAACGCCAAT	145037

C  KC877183.1	348	AAAAATGTCAGGTGCTAATCTAAATGCTGTCTGTGTATTGACTGATTCAA	299
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145038	AAAAATGTCAGGTGCTAATCTAAATGCTGTCTGTGTATTGACTGATTCAA	145087

C  KC877183.1	298	TTCTCATAGCATACATAGAACATAGTCCTTGGTTTCCATTCTGAAGACAG	249
			|||||||||||||||||||||| |||||||||||||||||||||||||||
  AC129915.6	145088	TTCTCATAGCATACATAGAACACAGTCCTTGGTTTCCATTCTGAAGACAG	145137

C  KC877183.1	248	AAACTGAGTCAGCAGGGAGAGGACCATGGGCTAAGGAACTCGCCAAAGAG	199
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145138	AAACTGAGTCAGCAGGGAGAGGACCATGGGCTAAGGAACTCGCCAAAGAG	145187

C  KC877183.1	198	AAGAGCCTGGAAGCGGCTCCAGGGTTTCTGCTTCCAGAAGGGTTTCCACT	149
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145188	AAGAGCCTGGAAGCGGCTCCAGGGTTTCTGCTTCCAGAAGGGTTTCCACT	145237

C  KC877183.1	148	TCCAGAAGGGTTACCTGTGGCCCAGACTCCTCTCTCAGGGACCTCAGAGC	99
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145238	TCCAGAAGGGTTACCTGTGGCCCAGACTCCTCTCTCAGGGACCTCAGAGC	145287

C  KC877183.1	98	TGAGTCCAGGGCCCAGAACGTTGCTGCCAAGGGCTTCTCCTCAGACTGTA	49
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145288	TGAGTCCAGGGCCCAGAACGTTGCTGCCAAGGGCTTCTCCTCAGACTGTA	145337

C  KC877183.1	48	TGTTTGAGAAGCTGGGCCACTTAAGTAAGCTACATTTAGCCACCATGA	1
			||||||||||||||||||||||||||||||||||||||||||||||||
  AC129915.6	145338	TGTTTGAGAAGCTGGGCCACTTAAGTAAGCTACATTTAGCCACCATGA	145385

Compact alignment

skip 250 bps 100% identity alignment

C  KC877183.1	298	TTCTCATAGCATACATAGAACATAGTCCTTGGTTTCCATTCTGAAGACAG	249
			|||||||||||||||||||||| |||||||||||||||||||||||||||
  AC129915.6	145088	TTCTCATAGCATACATAGAACACAGTCCTTGGTTTCCATTCTGAAGACAG	145137

skip 248 bps 100% identity alignment

Overview

Query
KC877183.1 - 548 bps
Hit
AC129915.6 - 162359 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 548 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.817505481548-11448381453851
Short-link