<=>End overlap alignment

Alignment #1 HSP: 423 bps / non-identical: 50 bps

Full alignment

C  KC877653.1	423	CACCTTGGTGTCGAGTCATTGCACAGATGGGCACGCTCATGGGAACAACC	374
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9218	CACCTTGGTGTCGAGTCATTGCACAGATGGGCACGCTCATGGGAACAACC	9267

C  KC877653.1	373	CTGAGCCCGGCTCCCAGAGGCTCACATGGGTGGTGTAAAGTAAATGTGTG	324
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9268	CTGAGCCCGGCTCCCAGAGGCTCACATGGGTGGTGTAAAGTAAATGTGTG	9317

C  KC877653.1	323	CCTGCCCTGGCCAAACCGGCACCTTTACTGGCAAGTAGGAGGCCACAGGG	274
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9318	CCTGCCCTGGCCAAACCGGCACCTTTACTGGCAAGTAGGAGGCCACAGGG	9367

C  KC877653.1	273	TATGGTGGGAAAGACCTGAATTCTGGTCCCAATTTTGCCTCCAACTTACT	224
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9368	TATGGTGGGAAAGACCTGAATTCTGGTCCCAATTTTGCCTCCAACTTACT	9417

C  KC877653.1	223	GGGTAGCCTCTGTCAGGACCCTCCCTGCCTCAGTTTTCCCATCTGTAAAA	174
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9418	GGGTAGCCTCTGTCAGGACCCTCCCTGCCTCAGTTTTCCCATCTGTAAAA	9467

C  KC877653.1	173	GAAAGGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	124
			|||| |||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9468	GAAATGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	9517

C  KC877653.1	123	GGTTGTAGGAATCACACTCTTCCTCATCTTCCTTCTCCCGGCAGGCTGCC	74
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9518	GGTTGTAGGAATCACACTCTTCCTCATCTTCCTTCTCCCGGCAGGCTGCC	9567

C  KC877653.1	73	CCAGGTCCCAGGGCCTTCTGCGTCCCAAGGATCATCTTGACAGAGTGTGC	24
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9568	CCAGGTCCCAGGGCCTTCTGCGTCCCAAGGATCATCTTGACAGAGTGTGC	9617

C  KC877653.1	23	CCCCAACCCTCCCTCCCCGCCAG	1
			|||||||||||||||||||||||
  AC115090.8	9618	CCCCAACCCTCCCTCCCCGCCAG	9640

Compact alignment

skip 250 bps 100% identity alignment

C  KC877653.1	173	GAAAGGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	124
			|||| |||||||||||||||||||||||||||||||||||||||||||||
  AC115090.8	9468	GAAATGGGCTAGGCTCACCTAACTGTAACACCCATTTTAGCTTGGGGTTT	9517

skip 123 bps 100% identity alignment

Overview

Query
KC877653.1 - 423 bps
Hit
AC115090.8 - 173716 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 423 bps)
Best alignment cartoon

Alternate alignments

Short-link