<=>End overlap alignment

Alignment #1 HSP: 1165 bps / non-identical: 1400 bps

Full alignment

FO203517.1	1	GGGAGGAGTCGCGAGTAGTGAGGTGAGTTGTTTTTTATCCCTTGCCCTAG	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18453	GGGAGGAGTCGCGAGTAGTGAGGTGAGTTGTTTTTTATCCCTTGCCCTAG	18502

FO203517.1	51	GTAGAAGCCAGTAGTAGAGTAGTGAGGAGTTTTAGCCCTTGCCGTGAGTA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18503	GTAGAAGCCAGTAGTAGAGTAGTGAGGAGTTTTAGCCCTTGCCGTGAGTA	18552

FO203517.1	101	GAAGTAGAGTAAGAGAAGTAGAATAGGAGTAGTTTAGCCCCTGCCCTAAG	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18553	GAAGTAGAGTAAGAGAAGTAGAATAGGAGTAGTTTAGCCCCTGCCCTAAG	18602

FO203517.1	151	AAGAAGCTGCTGGGGAAGGGAGCTGTAAAAGAAAAACCCCGAAGTAAAGT	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18603	AAGAAGCTGCTGGGGAAGGGAGCTGTAAAAGAAAAACCCCGAAGTAAAGT	18652

FO203517.1	201	TGCTGCATGAACCCAACTTGGTGTCTGTGTTGTTCCTGTCTCGCCACCGG	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18653	TGCTGCATGAACCCAACTTGGTGTCTGTGTTGTTCCTGTCTCGCCACCGG	18702

FO203517.1	251	CTCGGAGGACCGGGACAAATGGTGGCCCATACGCCGTGAAAACAGCAGTA	300
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18703	CTCGGAGGACCGGGACAAATGGTGGCCCATACGCCGTGAAAACAGCAGTA	18752

FO203517.1	301	GGGAAATTTTGGCAAACAGAGGTAAGGAAACCTTAGTAAACAGCGGTAAG	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18753	GGGAAATTTTGGCAAACAGAGGTAAGGAAACCTTAGTAAACAGCGGTAAG	18802

FO203517.1	351	AAATTTTAGTAAACAGCTGTAAGGAAATTTTGGTAAGCAATGGTATTTAA	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	18803	AAATTTTAGTAAACAGCTGTAAGGAAATTTTGGTAAGCAATGGTATTTAA	18852

FO203517.1	401	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCA----	446
			||||||||||||||||||||||||||||||||||||||||||||||    
AC087217.1	18853	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCACTGA	18902

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	18903	GAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTT	18952

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	18953	GAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAG	19002

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19003	CCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTT	19052

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19053	TCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT	19102

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19103	GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATT	19152

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19153	AGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAG	19202

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19203	GCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCT	19252

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19253	GCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCA	19302

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19303	ACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTA	19352

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19353	GATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTT	19402

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19403	TTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGA	19452

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19453	TTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGA	19502

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19503	CATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTG	19552

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19553	CATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTC	19602

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19603	TCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAG	19652

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19653	CGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGT	19702

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19703	CATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAA	19752

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19753	AGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAG	19802

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19803	TCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCG	19852

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19853	TATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGC	19902

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19903	TCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTT	19952

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19953	ATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAG	20002

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20003	TGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTG	20052

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20053	AGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAA	20102

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20103	AATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAAC	20152

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20153	CATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTA	20202

FO203517.1	447	----------------------------------TTAAAGTTCTCAGTTA	462
			                                  ||||||||||||||||
AC087217.1	20203	CCAAAATCATTAGGGGATTCATCAGGACTAAGCATTAAAGTTCTCAGTTA	20252

FO203517.1	463	GAGACTATTAGGTTCCCGGTAAGTGGGAAGATTCAAGTTCTCGGTTAGAG	512
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20253	GAGACTATTAGGTTCCCGGTAAGTGGGAAGATTCAAGTTCTCGGTTAGAG	20302

FO203517.1	513	ACCATTAGACCATTAGGTTTCTGGATTAGGGACTATTAAGGTTCTCAGGT	562
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20303	ACCATTAGACCATTAGGTTTCTGGATTAGGGACTATTAAGGTTCTCAGGT	20352

FO203517.1	563	ATAGAGACGAAGGTAAGGTTCCCGAGAAAAAAGGGACGAAGCATTAAGAT	612
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20353	ATAGAGACGAAGGTAAGGTTCCCGAGAAAAAAGGGACGAAGCATTAAGAT	20402

FO203517.1	613	TCTCAGGAATAGAGACGAAGGGAATTTCAGCAACATGGGTTCAATTGCGA	662
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20403	TCTCAGGAATAGAGACGAAGGGAATTTCAGCAACATGGGTTCAATTGCGA	20452

FO203517.1	663	CTAAAATGACAATGAAAATGTTAGTCATCTGGATCTTGGTCAGGGCGTGC	712
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20453	CTAAAATGACAATGAAAATGTTAGTCATCTGGATCTTGGTCAGGGCGTGC	20502

FO203517.1	713	TTGAGGGACACCAATGGAAAGTACAATAAGGAGATTGCTTTTCAGGCTAG	762
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20503	TTGAGGGACACCAATGGAAAGTACAATAAGGAGATTGCTTTTCAGGCTAG	20552

FO203517.1	763	CCGCCGAAAGTCTAAACAGCTTAGACAACAAACCAAAGATAAGAAAGAGA	812
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20553	CCGCCGAAAGTCTAAACAGCTTAGACAACAAACCAAAGATAAGAAAGAGA	20602

FO203517.1	813	AGAAGGAATCTAGCTCTGAAGGGTCTATTAGTGACAGCAACAAGACTGAT	862
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20603	AGAAGGAATCTAGCTCTGAAGGGTCTATTAGTGACAGCAACAAGACTGAT	20652

FO203517.1	863	AGTGAAAGCTGTCGTCGGATGTTCTGCTGGAGGTTGAGGCGCGGTAGGCC	912
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20653	AGTGAAAGCTGTCGTCGGATGTTCTGCTGGAGGTTGAGGCGCGGTAGGCC	20702

FO203517.1	913	GCCCAAACCATCAGCCACTCTGTTGCCTTCTCCTCCCCTCCATAAAGATG	962
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20703	GCCCAAACCATCAGCCACTCTGTTGCCTTCTCCTCCCCTCCATAAAGATG	20752

FO203517.1	963	AGGGAGACAAAAAGGGAAAGCATAGTATGGGTGATATTTTTTATTTGTGG	1012
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20753	AGGGAGACAAAAAGGGAAAGCATAGTATGGGTGATATTTTTTATTTGTGG	20802

FO203517.1	1013	ATCCTCTAATGTGGAAGTGGAAGAGGTATTTGGGACCCTAACTAAATGCC	1062
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20803	ATCCTCTAATGTGGAAGTGGAAGAGGTATTTGGGACCCTAACTAAATGCC	20852

FO203517.1	1063	TCTTGGAGAAGTGGAATTTGGTGATAGCCCCAGAAAAAGTTCAGAAGACA	1112
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20853	TCTTGGAGAAGTGGAATTTGGTGATAGCCCCAGAAAAAGTTCAGAAGACA	20902

FO203517.1	1113	GACATACAACACTATTTAGGTACTAAAGTGAGAGATGCTGTTGTCGAGCC	1162
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC087217.1	20903	GACATACAACACTATTTAGGTACTAAAGTGAGAGATGCTGTTGTCGAGCC	20952

FO203517.1	1163	ACT	1165
			|||
AC087217.1	20953	ACT	20955

Compact alignment

skip 400 bps 100% identity alignment

FO203517.1	401	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCA----	446
			||||||||||||||||||||||||||||||||||||||||||||||    
AC087217.1	18853	AGAAAGCACAGGCCTGTAAGGTTGCCTGGAAAAAAGGGACTAAGCACTGA	18902

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	18903	GAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTT	18952

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	18953	GAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAG	19002

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19003	CCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTT	19052

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19053	TCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCT	19102

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19103	GAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATT	19152

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19153	AGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAG	19202

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19203	GCCTAGTCCGTAGGCAGGACTTTTCAAGTCTCGGAAGGTTTCTTCAATCT	19252

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19253	GCATTCGCTTCGAATAGATATTAACAAGTTGTTTGGGTGTTCGAATTTCA	19302

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19303	ACAGGTAAGTTAGTTGCTAGAACCCATGGCTCCTTTGCCGACGCTGAGTA	19352

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19353	GATTTTAGGTGACGGGTGGTGACAATGAGTCCGTGTCGAGCGCTGATTTT	19402

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19403	TTCGGCCTTTAGAGCGAGATTTATACAATAGAATTTGGCATGAGATTGGA	19452

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19453	TTGCTTTTAGTCAGCCTCTTATAGCCTAAAGTCTTTGAGTGACTAGATGA	19502

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19503	CATATCATGTAAGTTGCTGATAGGTTTCCAGTTTTCCGCTCCTAGGTCTG	19552

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19553	CATATTGTACTTTTCCTCTTACTCGACTTAACCAGTACCAACCCAGCTTC	19602

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19603	TCAACGGATTTATACCATGGCACTTTAAAGCCAGCATCACTGACAATGAG	19652

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19653	CGGTGTGGTGTTACTCGGTAGAATGCTCGCAAGGTCGGCTAGAAATTGGT	19702

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19703	CATGAGCTTTCTTTGAACATTGCTCTGAAAGCGGGAACGCTTTCTCATAA	19752

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19753	AGAGTAACAGAACGACCGTGTAGTGCGACTGAAGCTCGCAATACCATAAG	19802

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19803	TCGTTTTTGCTCACGAATATCAGACCAGTCAACAAGTACAATGGGCATCG	19852

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19853	TATTGCCCGAACAGATAAAGCTAGCATGCCAACGGTATACAGCGAGTCGC	19902

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19903	TCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTT	19952

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	19953	ATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAG	20002

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20003	TGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTG	20052

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20053	AGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAA	20102

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20103	AATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAAC	20152

FO203517.1	447	--------------------------------------------------	446
			                                                  
AC087217.1	20153	CATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTA	20202

FO203517.1	447	----------------------------------TTAAAGTTCTCAGTTA	462
			                                  ||||||||||||||||
AC087217.1	20203	CCAAAATCATTAGGGGATTCATCAGGACTAAGCATTAAAGTTCTCAGTTA	20252

skip 703 bps 100% identity alignment

Overview

Query
FO203517.1 - 1165 bps
Hit
AC087217.1 - 77366 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 1165 bps)
Best alignment cartoon

Alternate alignments

Short-link