<=>End overlap alignment

Alignment #1 HSP: 255 bps / non-identical: 50 bps

Full alignment

C  FJ695204.1	255	AACAAAAACATGAATAGTAGCTGCTGTTTTTAGGAAGTCTGTAAACCAAA	206
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC018452.11	41355	AACAAAAACATGAATAGTAGCTGCTGTTTTTAGGAAGTCTGTAAACCAAA	41404

C  FJ695204.1	205	GAAAATCAGGTCAGGGAGATACTATCAGCTATTCCAATCTTTTCCCCACA	156
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC018452.11	41405	GAAAATCAGGTCAGGGAGATACTATCAGCTATTCCAATCTTTTCCCCACA	41454

C  FJ695204.1	155	TATACTTACTGCGTCTCAGCTCCTAGTAGCATCTCCACTTTCTCATTCGC	106
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC018452.11	41455	TATACTTACTGCGTCTCAGCTCCTAGTAGCATCTCCACTTTCTCATTCGC	41504

C  FJ695204.1	105	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTG----ACTGGCAGAGCTC	60
			|||||||||||||||||||||||||||||||||    |||||||||||||
  AC018452.11	41505	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTGACTGACTGGCAGAGCTC	41554

C  FJ695204.1	59	TGTCTTGAATAGAGCATTGTGGAGCTGTTCTTCCCTGGAGAAGAATTAAG	10
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC018452.11	41555	TGTCTTGAATAGAGCATTGTGGAGCTGTTCTTCCCTGGAGAAGAATTAAG	41604

C  FJ695204.1	9	CTCTTCATT	1
			|||||||||
  AC018452.11	41605	CTCTTCATT	41613

Compact alignment

skip 150 bps 100% identity alignment

C  FJ695204.1	105	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTG----ACTGGCAGAGCTC	60
			|||||||||||||||||||||||||||||||||    |||||||||||||
  AC018452.11	41505	GTGGTTACTAAGGACTGTCAGAGTAAAGAGGTGACTGACTGGCAGAGCTC	41554

skip 59 bps 100% identity alignment

Overview

Query
FJ695204.1 - 255 bps
Hit
AC018452.11 - 171523 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 255 bps)
Best alignment cartoon

Alternate alignments

Short-link