<=>End overlap alignment

Alignment #1 HSP: 543 bps / non-identical: 50 bps

Full alignment

KC877652.1	1	AGGGGAGTCCCATTCTCCTCACCCACTCCCTTCTCATTTCCATAGGCTGA	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176248	AGGGGAGTCCCATTCTCCTCACCCACTCCCTTCTCATTTCCATAGGCTGA	176297

KC877652.1	51	GTCTCCAGAATTCCATGGTGGTATCTATCCAGAAGCACCTTCCTGAAGCG	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176298	GTCTCCAGAATTCCATGGTGGTATCTATCCAGAAGCACCTTCCTGAAGCG	176347

KC877652.1	101	CCCAGCCCAGCCGGTGTTTCCCTGGCCCTCAGAGCTGTCCATTTCACAGA	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176348	CCCAGCCCAGCCGGTGTTTCCCTGGCCCTCAGAGCTGTCCATTTCACAGA	176397

KC877652.1	151	GAGCAAAATCAAGGCTCTGAGAGTGGTGCCAGCTGCCTAACGACCCCTCG	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176398	GAGCAAAATCAAGGCTCTGAGAGTGGTGCCAGCTGCCTAACGACCCCTCG	176447

KC877652.1	201	CCCCCATTTCCCCTTTCCCATCCCAACAAGAGCACAAATCACGAGCCTTC	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176448	CCCCCATTTCCCCTTTCCCATCCCAACAAGAGCACAAATCACGAGCCTTC	176497

KC877652.1	251	AGGTTTTGCACAATTTTGCTCAATTTCCTGCCTGAATGGCACAGGGCCTG	300
			|||||||||||||||||||| |||||||||||||||||||||||||||||
AC015938.17	176498	AGGTTTTGCACAATTTTGCTAAATTTCCTGCCTGAATGGCACAGGGCCTG	176547

KC877652.1	301	ACCCTCTGCAGGTGCTCAGGAAATGTTCGTGGAATCAATAAAGGACAGCT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176548	ACCCTCTGCAGGTGCTCAGGAAATGTTCGTGGAATCAATAAAGGACAGCT	176597

KC877652.1	351	AAATCTCCCATCTTCTGAAAGCTCTTTGTCTCCTCCCTCCCTCCTGCTCC	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176598	AAATCTCCCATCTTCTGAAAGCTCTTTGTCTCCTCCCTCCCTCCTGCTCC	176647

KC877652.1	401	CCACACTCCATCAGGGTGGCTGGTGGCCTCCTCCTCTGGAAAGCCTCTCG	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176648	CCACACTCCATCAGGGTGGCTGGTGGCCTCCTCCTCTGGAAAGCCTCTCG	176697

KC877652.1	451	AATGGCTCCTTTCTCTTCTTTGCCCCTGCTGCTGCTCTAGTGGAGTCCTT	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176698	AATGGCTCCTTTCTCTTCTTTGCCCCTGCTGCTGCTCTAGTGGAGTCCTT	176747

KC877652.1	501	GCTAGCACTTACGCGGGCCACTGCACTAGGCTGCTCAGAGGTC	543
			|||||||||||||||||||||||||||||||||||||||||||
AC015938.17	176748	GCTAGCACTTACGCGGGCCACTGCACTAGGCTGCTCAGAGGTC	176790

Compact alignment

skip 250 bps 100% identity alignment

KC877652.1	251	AGGTTTTGCACAATTTTGCTCAATTTCCTGCCTGAATGGCACAGGGCCTG	300
			|||||||||||||||||||| |||||||||||||||||||||||||||||
AC015938.17	176498	AGGTTTTGCACAATTTTGCTAAATTTCCTGCCTGAATGGCACAGGGCCTG	176547

skip 243 bps 100% identity alignment

Overview

Query
KC877652.1 - 543 bps
Hit
AC015938.17 - 180393 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 543 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.81580543154311762481767901
Short-link