<=>End overlap alignment

Alignment #1 HSP: 534 bps / non-identical: 50 bps

Full alignment

C  KC877650.1	534	GAGCTGGGCTAAGAGGGGCAGTCTTAGGCGGGGTCCAGGCTACCCTGGTG	485
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	115830	GAGCTGGGCTAAGAGGGGCAGTCTTAGGCGGGGTCCAGGCTACCCTGGTG	115879

C  KC877650.1	484	AGGTCTCCATCCTTTCAAAGCTCCCCTGGAGTTGTTCTCGAAGCCTCCCA	435
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	115880	AGGTCTCCATCCTTTCAAAGCTCCCCTGGAGTTGTTCTCGAAGCCTCCCA	115929

C  KC877650.1	434	GAGTCAGCTTGTTCAGCTTGAATAATATCTGTCCCTGGCCTTGTCCCCTC	385
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	115930	GAGTCAGCTTGTTCAGCTTGAATAATATCTGTCCCTGGCCTTGTCCCCTC	115979

C  KC877650.1	384	CCCACACATTTCACCTTCAAAGGGCCAGGAGAAATTTCCCTAATTAATTA	335
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	115980	CCCACACATTTCACCTTCAAAGGGCCAGGAGAAATTTCCCTAATTAATTA	116029

C  KC877650.1	334	ACTCCTCTGCAGCCTGCCCTCCATGTCATTGGGTGATTAATCGTCACTGT	285
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	116030	ACTCCTCTGCAGCCTGCCCTCCATGTCATTGGGTGATTAATCGTCACTGT	116079

C  KC877650.1	284	GACTTTAAATCCAGGGGCGGAGGGAAGTTGGCAGGGGTGGAGGCCAGAAG	235
			||||||||||||||||||||||| ||||||||||||||||||||||||||
  AC015938.17	116080	GACTTTAAATCCAGGGGCGGAGGTAAGTTGGCAGGGGTGGAGGCCAGAAG	116129

C  KC877650.1	234	CAGGGATGCTGGGGGTTGGGGGAGGCAGCCTGAGGGCCTTTCCTGGGGTT	185
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	116130	CAGGGATGCTGGGGGTTGGGGGAGGCAGCCTGAGGGCCTTTCCTGGGGTT	116179

C  KC877650.1	184	GGAAGACCCCCACCTCATCCCCATTCTTGTCCTTGCCCAGGGCCTGGCCA	135
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	116180	GGAAGACCCCCACCTCATCCCCATTCTTGTCCTTGCCCAGGGCCTGGCCA	116229

C  KC877650.1	134	AGAGGCCCCAGAGCCAGACCACAAATACATCCATCAATAATCAATCAATG	85
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	116230	AGAGGCCCCAGAGCCAGACCACAAATACATCCATCAATAATCAATCAATG	116279

C  KC877650.1	84	AGTCTCAAATAGAGACGGTGAGAACTAGGCCATTCTGGGAGAGGCGGGGT	35
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	116280	AGTCTCAAATAGAGACGGTGAGAACTAGGCCATTCTGGGAGAGGCGGGGT	116329

C  KC877650.1	34	GGCTCCTGCCTATTCTAAAGTCTGCAAAACAGGG	1
			||||||||||||||||||||||||||||||||||
  AC015938.17	116330	GGCTCCTGCCTATTCTAAAGTCTGCAAAACAGGG	116363

Compact alignment

skip 250 bps 100% identity alignment

C  KC877650.1	284	GACTTTAAATCCAGGGGCGGAGGGAAGTTGGCAGGGGTGGAGGCCAGAAG	235
			||||||||||||||||||||||| ||||||||||||||||||||||||||
  AC015938.17	116080	GACTTTAAATCCAGGGGCGGAGGTAAGTTGGCAGGGGTGGAGGCCAGAAG	116129

skip 234 bps 100% identity alignment

Overview

Query
KC877650.1 - 534 bps
Hit
AC015938.17 - 180393 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 534 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.812705341534-11158301163631
Short-link