<=>End overlap alignment

Alignment #1 HSP: 564 bps / non-identical: 50 bps

Full alignment

KC877645.1	1	TAATCCACGAATGGCTGTGGAATGGAGCTACAGGGAGCGGCAGATGGGAT	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51063	TAATCCACGAATGGCTGTGGAATGGAGCTACAGGGAGCGGCAGATGGGAT	51112

KC877645.1	51	CCTTCACACAGCATGTCTGCCCACGTAGGACCTGAACATAGCTGGGCCCC	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51113	CCTTCACACAGCATGTCTGCCCACGTAGGACCTGAACATAGCTGGGCCCC	51162

KC877645.1	101	TTCAGCCTCTGTCCTACCCCTGCGCCCACCCTATAGCCATGCAGCACACA	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51163	TTCAGCCTCTGTCCTACCCCTGCGCCCACCCTATAGCCATGCAGCACACA	51212

KC877645.1	151	CACGGCCAGTTCCCAACGTGTGGGTGAACATTGCGGGTTTCACTGAAGTT	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51213	CACGGCCAGTTCCCAACGTGTGGGTGAACATTGCGGGTTTCACTGAAGTT	51262

KC877645.1	201	TTTGTGGGAAACCAGGGGAGCAGATGGCATCATACAGCACACTCCAGCCT	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51263	TTTGTGGGAAACCAGGGGAGCAGATGGCATCATACAGCACACTCCAGCCT	51312

KC877645.1	251	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCTTCGTCATCTCTCTTC	300
			|||||||||||||||||||||||||||||||||| |||||||||||||||
AC015938.17	51313	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCATCGTCATCTCTCTTC	51362

KC877645.1	301	CAGGCAGTGCTCTTCCCCTCCTCTCCAATCCCAGTTTCTTTAACAAAACC	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51363	CAGGCAGTGCTCTTCCCCTCCTCTCCAATCCCAGTTTCTTTAACAAAACC	51412

KC877645.1	351	AAATCCTCATTTTACATCCCCAATGAAGCAAAACAAAGCCGGATAGGACA	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51413	AAATCCTCATTTTACATCCCCAATGAAGCAAAACAAAGCCGGATAGGACA	51462

KC877645.1	401	CAGACCACAGGGCTCCTGCTCCACCGGTATCTCATTCAACCTCCTTTATC	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51463	CAGACCACAGGGCTCCTGCTCCACCGGTATCTCATTCAACCTCCTTTATC	51512

KC877645.1	451	CCCATCTTTTTATTATGGCCAACCATTTTATCCTCACGCAGGCCTCTGTG	500
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51513	CCCATCTTTTTATTATGGCCAACCATTTTATCCTCACGCAGGCCTCTGTG	51562

KC877645.1	501	CCCTGCACACACAACAGCTTCCTCAAGCTGCCCTCCATGTGGGTGCTGTG	550
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC015938.17	51563	CCCTGCACACACAACAGCTTCCTCAAGCTGCCCTCCATGTGGGTGCTGTG	51612

KC877645.1	551	AGGCTCCGAGAGGA	564
			||||||||||||||
AC015938.17	51613	AGGCTCCGAGAGGA	51626

Compact alignment

skip 250 bps 100% identity alignment

KC877645.1	251	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCTTCGTCATCTCTCTTC	300
			|||||||||||||||||||||||||||||||||| |||||||||||||||
AC015938.17	51313	AATCACAGCAGCCCTGGGTTTCTCCCTTCTCTCCATCGTCATCTCTCTTC	51362

skip 264 bps 100% identity alignment

Overview

Query
KC877645.1 - 564 bps
Hit
AC015938.17 - 180393 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 564 bps)
Best alignment cartoon

Alternate alignments

Short-link