<=>End overlap alignment

Alignment #1 HSP: 543 bps / non-identical: 50 bps

Full alignment

C  KC877642.1	543	GGCTCAGGGGATCCCCAGATGCTTCCAGATCTACATTAGGGACCCTAGCC	494
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57337	GGCTCAGGGGATCCCCAGATGCTTCCAGATCTACATTAGGGACCCTAGCC	57386

C  KC877642.1	493	CTCTCTTATCACCCCGTTTATTTCCTTCTAAGCACTTATAACATGACATT	444
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57387	CTCTCTTATCACCCCGTTTATTTCCTTCTAAGCACTTATAACATGACATT	57436

C  KC877642.1	443	CTCTCAAAGATTTGTTCACTTATTCATTCACTTGTTTATTACCTATCTCT	394
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57437	CTCTCAAAGATTTGTTCACTTATTCATTCACTTGTTTATTACCTATCTCT	57486

C  KC877642.1	393	CCCCATGAGAATGCAAGCGCTGTGAGGGCAAGGACTTTATTTATATATAT	344
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57487	CCCCATGAGAATGCAAGCGCTGTGAGGGCAAGGACTTTATTTATATATAT	57536

C  KC877642.1	343	CTGATTCCCTGGAGCCTGCATTGGTTCCTAGCACAGAACAGGACTCAATA	294
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57537	CTGATTCCCTGGAGCCTGCATTGGTTCCTAGCACAGAACAGGACTCAATA	57586

C  KC877642.1	293	AATAGTGTTGAATAAGCAAATGTGTTGAACCTGATACTCAGTTTCCTTAT	244
			|||||||||||||||||||| |||||||||||||||||||||||||||||
  AC015938.17	57587	AATAGTGTTGAATAAGCAAACGTGTTGAACCTGATACTCAGTTTCCTTAT	57636

C  KC877642.1	243	CTATAAAATGGGATAATAATATCTGCTCTGCAGGGTCATAAAGAGCTTGG	194
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57637	CTATAAAATGGGATAATAATATCTGCTCTGCAGGGTCATAAAGAGCTTGG	57686

C  KC877642.1	193	CACACAGCAGGTGACCCATAAATTATGCTACCCTCACTCCACCCCCTGCA	144
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57687	CACACAGCAGGTGACCCATAAATTATGCTACCCTCACTCCACCCCCTGCA	57736

C  KC877642.1	143	GACCCCATTAAATTAAGCACTGAAATGCCCAGAGAAGCTCTCCTACTTAA	94
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57737	GACCCCATTAAATTAAGCACTGAAATGCCCAGAGAAGCTCTCCTACTTAA	57786

C  KC877642.1	93	AAAAAGCCCTTGGATGAATCCTCTTTTTTAGAGGGCAAATAGCTTTTCTT	44
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57787	AAAAAGCCCTTGGATGAATCCTCTTTTTTAGAGGGCAAATAGCTTTTCTT	57836

C  KC877642.1	43	TTTATTTCTTTATTTCTTTTTTTAAAATATAATTGTAAAAATT	1
			|||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	57837	TTTATTTCTTTATTTCTTTTTTTAAAATATAATTGTAAAAATT	57879

Compact alignment

skip 250 bps 100% identity alignment

C  KC877642.1	293	AATAGTGTTGAATAAGCAAATGTGTTGAACCTGATACTCAGTTTCCTTAT	244
			|||||||||||||||||||| |||||||||||||||||||||||||||||
  AC015938.17	57587	AATAGTGTTGAATAAGCAAACGTGTTGAACCTGATACTCAGTTTCCTTAT	57636

skip 243 bps 100% identity alignment

Overview

Query
KC877642.1 - 543 bps
Hit
AC015938.17 - 180393 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 543 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.815805431543-157337578791
Short-link