<=>End overlap alignment

Alignment #1 HSP: 550 bps / non-identical: 50 bps

Full alignment

C  KC877639.1	550	TCACCTCTCACCATACACAGAAATTAACTCAAGATGTAAAACAATACAAC	501
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19269	TCACCTCTCACCATACACAGAAATTAACTCAAGATGTAAAACAATACAAC	19318

C  KC877639.1	500	TTCTGGAAGAAAACATGGGGGAAGACTTTTGGGATCTTGAGGTAGGCAGA	451
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19319	TTCTGGAAGAAAACATGGGGGAAGACTTTTGGGATCTTGAGGTAGGCAGA	19368

C  KC877639.1	450	GATTTCTTGGGTAGAACATAGTCATAGGCTGGAATTGCATATCATTGAGC	401
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19369	GATTTCTTGGGTAGAACATAGTCATAGGCTGGAATTGCATATCATTGAGC	19418

C  KC877639.1	400	ACAAGCTCTGAAATCAGAAAACATCTCTTTGATTCCTGTCTTATTGTATA	351
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19419	ACAAGCTCTGAAATCAGAAAACATCTCTTTGATTCCTGTCTTATTGTATA	19468

C  KC877639.1	350	ACTGGCTGCATTGAACTTAGGTAAGTTACTTACTTTCTCTGAGCTCATAT	301
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19469	ACTGGCTGCATTGAACTTAGGTAAGTTACTTACTTTCTCTGAGCTCATAT	19518

C  KC877639.1	300	GCCTTCTTGTACAATGAAGGTATAATACTACCTACCTCTCTGGATGCCTG	251
			|||||||||||||||||||||||||||| |||||||||||||||||||||
  AC015938.17	19519	GCCTTCTTGTACAATGAAGGTATAATACCACCTACCTCTCTGGATGCCTG	19568

C  KC877639.1	250	TAAAGTTCAGAGAACTAATGCATGTGAAATAGTCTTTTTTAAAATTTTTA	201
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19569	TAAAGTTCAGAGAACTAATGCATGTGAAATAGTCTTTTTTAAAATTTTTA	19618

C  KC877639.1	200	TTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTTCAGTGG	151
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19619	TTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTTCAGTGG	19668

C  KC877639.1	150	TGCAATGTCATTGCAACCTCCGCTTCCCAGGCTCAAGCAATTCTCCCACC	101
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19669	TGCAATGTCATTGCAACCTCCGCTTCCCAGGCTCAAGCAATTCTCCCACC	19718

C  KC877639.1	100	TCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCATGCTCAGCT	51
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19719	TCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCATGCTCAGCT	19768

C  KC877639.1	50	AATGTTTTAGTTTTATTTATTTATTTATTTATTTGCAGAGATGAGATCTT	1
			||||||||||||||||||||||||||||||||||||||||||||||||||
  AC015938.17	19769	AATGTTTTAGTTTTATTTATTTATTTATTTATTTGCAGAGATGAGATCTT	19818

Compact alignment

skip 250 bps 100% identity alignment

C  KC877639.1	300	GCCTTCTTGTACAATGAAGGTATAATACTACCTACCTCTCTGGATGCCTG	251
			|||||||||||||||||||||||||||| |||||||||||||||||||||
  AC015938.17	19519	GCCTTCTTGTACAATGAAGGTATAATACCACCTACCTCTCTGGATGCCTG	19568

skip 250 bps 100% identity alignment

Overview

Query
KC877639.1 - 550 bps
Hit
AC015938.17 - 180393 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 550 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.818205501550-119269198181
Short-link