<=>End overlap alignment

Alignment #1 HSP: 490 bps / non-identical: 50 bps

Full alignment

KC877655.1	1	GAATGGACTCTGAAATGATACAGATTCAAATCACAGACTTGTCAGTTTCA	50
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107223	GAATGGACTCTGAAATGATACAGATTCAAATCACAGACTTGTCAGTTTCA	107272

KC877655.1	51	GTCAAGTTTCATCTTCTCAAAGCCCTAATTTCTTCACCTGTAAAACTGAA	100
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107273	GTCAAGTTTCATCTTCTCAAAGCCCTAATTTCTTCACCTGTAAAACTGAA	107322

KC877655.1	101	AATTATACATCTAGAATATAATCTAGCTTCTAGAGATGGCCTCTGCACTT	150
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107323	AATTATACATCTAGAATATAATCTAGCTTCTAGAGATGGCCTCTGCACTT	107372

KC877655.1	151	CTTGGCTCGTGGTCCTATCTCAAAGCCAGCAGGTAGCATCTGCCACTCTC	200
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107373	CTTGGCTCGTGGTCCTATCTCAAAGCCAGCAGGTAGCATCTGCCACTCTC	107422

KC877655.1	201	TTCTTCTGTCTACTTCTGTTGTCACATCACTTTCTCCCACTCTTCCCCTC	250
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107423	TTCTTCTGTCTACTTCTGTTGTCACATCACTTTCTCCCACTCTTCCCCTC	107472

KC877655.1	251	CTACCTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	300
			|||| |||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107473	CTACTTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	107522

KC877655.1	301	ATTAAATTAGAATGAATGTAAAGCATATAGCACAAGGATCGGCAGGCCCT	350
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107523	ATTAAATTAGAATGAATGTAAAGCATATAGCACAAGGATCGGCAGGCCCT	107572

KC877655.1	351	AGGTGCAAAATATTAATAAATGGTAACCAGTAGTAGTAGTAATAATAGTA	400
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107573	AGGTGCAAAATATTAATAAATGGTAACCAGTAGTAGTAGTAATAATAGTA	107622

KC877655.1	401	ATAGTAATAGTAGTAGTATGGAATCAAAGGGCCTCACTGTGGCAATATAG	450
			||||||||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107623	ATAGTAATAGTAGTAGTATGGAATCAAAGGGCCTCACTGTGGCAATATAG	107672

KC877655.1	451	TTCATTTAGGAAGTCATTTACCTGAAATGAAGCAATAGTG	490
			||||||||||||||||||||||||||||||||||||||||
AC004099.1	107673	TTCATTTAGGAAGTCATTTACCTGAAATGAAGCAATAGTG	107712

Compact alignment

skip 250 bps 100% identity alignment

KC877655.1	251	CTACCTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	300
			|||| |||||||||||||||||||||||||||||||||||||||||||||
AC004099.1	107473	CTACTTTCCCCTTATAAGGACTCATCATGTGATTACATGGGGTTACCAGG	107522

skip 190 bps 100% identity alignment

Overview

Query
KC877655.1 - 490 bps
Hit
AC004099.1 - 136222 bps
Total alignments
1
Best alignment
alignment #1 (HSP: 490 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
199.79590490149011072231077121
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