<=>End overlap alignment

Alignment #1 HSP: 293 bps / non-identical: 293 bps

Full alignment

C  AJ251914.1	2145	GGAGTTCCCATCGTGGCGCAGTAGTTAACGAATCCGACTAGGAACCATGA	2096
			||||||||| | ||||| |||| |||||||||||||||||||||||||||
  AB113354.2	34970	GGAGTTCCCGTTGTGGCTCAGTGGTTAACGAATCCGACTAGGAACCATGA	35019

C  AJ251914.1	2095	GGTTGCGGGTTCGGTCCCTGCCCTTGCTCAATGGGTTAACGATCTGGCAT	2046
			|||||| | |||| |||||| |||||||||||||||||| |||| ||  |
  AB113354.2	35020	GGTTGCAGTTTCGATCCCTGGCCTTGCTCAATGGGTTAAGGATCCGGTGT	35069

C  AJ251914.1	2045	TGCCGTGAGCTGTGGTGTAGGTTGCAGACGCAGCTCGGATCCTGCGTTGC	1996
			||||||||||||||||||||||||||||||  ||| ||||||||||||||
  AB113354.2	35070	TGCCGTGAGCTGTGGTGTAGGTTGCAGACGTGGCTTGGATCCTGCGTTGC	35119

C  AJ251914.1	1995	TGTGGCTCTGGCGTCGGCCAGTGGCTACAGCTCCGATTGGACCCCTAGCC	1946
			|||||||||||||| |||||||||| || ||||| |||||||||||||||
  AB113354.2	35120	TGTGGCTCTGGCGTAGGCCAGTGGCCACGGCTCCAATTGGACCCCTAGCC	35169

C  AJ251914.1	1945	TGGGAACCTCCTTATGCCGCGGGAGTGGCCCAAGAAATAGCAAAAAGACA	1896
			||||||||||| ||||| ||||||||||||| |||||  |||||||||||
  AB113354.2	35170	TGGGAACCTCCATATGCTGCGGGAGTGGCCCTAGAAAAGGCAAAAAGACA	35219

C  AJ251914.1	1895	AAAAAAAAAAGAAAGGAAAGAAAGAGAAAAGCATTCCTTTCTG	1853
			|||||  ||| |||  |||       ||||| |||||||||||
  AB113354.2	35220	AAAAACCAAACAAACAAAA-------AAAAGAATTCCTTTCTG	35255

Overview

Query
AJ251914.1 - 158063 bps
Hit
AB113354.2 - 154749 bps
Total alignments
38
Best alignment
alignment #1 (HSP: 293 bps)
Best alignment cartoon

Alternate alignments

#%IDscoreHSPstartendstrandhstarthendhstrand
187.0618529318532145-134970352551
282.32214767620076675-149173496351
391.932132866614166426159579598631
494.46224271154656154926-159594598641
593.94214264144868145131-159600598631
679.542575456614466688-168960694771
783.012304408940089839-169006694581
881.722284657619276656-169012694761
987.682163377484975185169135694751
1091.28221300123772124071169166694631
11942282826191962200-169194694761
1292.21213280121111121390169195694761
1393.232142697284073108-169196694611
1483.32675799652897106174314748881
1588.432263386186562202183925842611
1691.062172917619176481183967842571
1792.13223287121111121397-183967842581
1892.1229288154657154944-183967842571
1992.12222836614566427183968842581
2093.75222265144867145131-183987842581
2192.712152776615066426195873961461
2293.44215274121112121385-195873961461
2393.042142738031280584195874961461
2493.932162667284373108195883961461
2592.572132758031480588-11079831082511
2694.512312807283073109-11079861082581
2793.6212267749017516711079871082521
2895.4422426412111212137511079871082491
2995.0922426512380012406411079871082511
3094.3421826514486814513211079871082511
3195.6921925515465715491111079871082411
3294.342182656193462198-11079871082511
3394.722212656616266426-11079871082511
3493.972132677621576481-11079871082511
3593.1221627512379712407111174261177011
3692.282172856614566429-11174261177101
3793.612172697284073108-11174291176941
3891.517891110105160106269-11523241534291
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