ChromoView - clone / Assembly sequencing status

Mouse: Sub region 14_proximal (TPF updated: 2011-04-08)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP24-211P18
MMCHR14_CTG2
bN211P18
AC192434.2
finished
2 RP24-97G3
MMCHR14_CTG2
bN97G3
AC131650.5
finished
3 RP23-388I12
MMCHR14_CTG2
bM388I12
AC186757.2
finished
4 RP23-401J21
MMCHR14_CTG2
bM401J21
AC136642.4
finished
5 RP24-547N23
MMCHR14_CTG2
bN547N23
AC186378.2
finished
6 RP23-2H19
MMCHR14_CTG2
bM2H19
AC192473.1
finished
7 RP24-366D9
MMCHR14_CTG2
bN366D9
AC193220.1
finished
8 RP23-51D4
MMCHR14_CTG2
bM51D4
AC192089.5
finished
9 RP23-45E20
MMCHR14_CTG2
bM45E20
AC186193.2
finished
10 RP24-426N16
MMCHR14_CTG2
bN426N16
AC192331.1
finished
11 RP23-227N11
MMCHR14_CTG2
bM227N11
AC188088.1
finished
12 RP24-218O5
MMCHR14_CTG2
bN218O5
AC186381.2
finished
13 RP24-312N10
MMCHR14_CTG2
bN312N10
AC196039.1
finished
14 RP24-243P7
MMCHR14_CTG2
bN243P7
AC141630.3
finished
15 RP24-70M22
MMCHR14_CTG2
bN70M22
AC161870.4
finished
16 RP23-71L2
MMCHR14_CTG2
bM71L2
AC167722.2
finished
17 RP24-576O9
MMCHR14_CTG2
bN576O9
AC164114.2
finished
18 RP24-80K11
MMCHR14_CTG2
bN80K11
AC190173.1
finished
19 RP23-254B9
MMCHR14_CTG2
bM254B9
AC125198.4
finished
20 RP23-274E2
MMCHR14_CTG2
bM274E2
AC188089.1
finished
21 RP23-97D14
MMCHR14_CTG2
bM97D14
AC168071.4
finished
22 RP23-460G24
MMCHR14_CTG2
bM460G24
AC165952.4
finished
23 RP23-314N18
MMCHR14_CTG2
bM314N18
AC134588.5
finished
24 RP24-152K24
MMCHR14_CTG2
bN152K24
AC144775.2
finished
25 RP24-83L12
MMCHR14_CTG2
bN83L12
AC242684.3
finished
26 RP23-424N6
MMCHR14_CTG2
bM424N6
AC242738.2
finished
27 RP23-188F24
MMCHR14_CTG2
bM188F24
AC195265.1
finished
28 RP23-80K12
MMCHR14_CTG2
bM80K12
AC162942.5
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 174832 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192434.2 1 174832 +
174833 267616 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC131650.5 1 92784 -
267617 381810 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186757.2 1 114194 -
381811 499276 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC136642.4 50785 168250 +
499277 675722 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186378.2 59219 235664 +
675723 816342 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192473.1 1 140620 -
816343 832747 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC193220.1 1 16405 -
832748 1060048 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192089.5 1 227301 -
1060049 1157492 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186193.2 148372 245815 +
1157493 1224214 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192331.1 1 66722 -
1224215 1367814 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC188088.1 1 143600 -
1367815 1516955 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186381.2 1 149141 -
1516956 1570386 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC196039.1 1 53431 -
1570387 1718175 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC141630.3 1 147789 -
1718176 1848991 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC161870.4 1 130816 -
1848992 2052711 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC167722.2 29960 233679 +
2052712 2200466 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC164114.2 34478 182232 +
2200467 2281171 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC190173.1 1 80705 -
2281172 2424864 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC125198.4 1 143693 -
2424865 2636837 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC188089.1 1 211973 -
2636838 2807124 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC168071.4 100445 270731 +
2807125 2929401 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC165952.4 1 122277 -
2929402 3023616 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC134588.5 84743 178957 +
3023617 3171745 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC144775.2 2956 151084 +
3171746 3317089 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC242684.3 92853 238196 +
3317090 3317089 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC242738.2 74496 34121 -
3317090 3322089 27 N 5000 contig no
3322090 3529480 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 AC195265.1 1 207391 -
3529481 3596578 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 AC162942.5 1 67098 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
28
Clone HTGS Phases
finished
28
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,056,882
Total finished length of fin clones w/ overlap
5,609,076
Total finished length of fin clones w/o overlap
3,552,194
Total overlap length of fin+unfin clones
2,056,882
Total finished length of fin+unfin clones w/ overlap
5,609,076
Total finished length of fin+unfin clones w/o overlap
3,552,194

AGP errors

# rank accession seq_start seq_end strand error date
1 26 AC242738.2 74,496 34,121 -1 For sequence AC242738.2 chr_length = -40374 which is less than 1! (start = 74496 end = 34121) This sequence may be redundant, or its overlaps are wrong Wed, 22 Apr 2015 00:35

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* quick link - http://q.sanger.ac.uk/m1im6rvb