ChromoView - clone / Assembly sequencing status

Mouse: Sub region 14_proximal (TPF updated: 2011-04-08)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP24-211P18
MMCHR14_CTG2
bN211P18
AC192434.2
finished
2 RP24-97G3
MMCHR14_CTG2
bN97G3
AC131650.5
finished
3 RP23-388I12
MMCHR14_CTG2
bM388I12
AC186757.2
finished
4 RP23-401J21
MMCHR14_CTG2
bM401J21
AC136642.4
finished
5 RP24-547N23
MMCHR14_CTG2
bN547N23
AC186378.2
finished
6 RP23-2H19
MMCHR14_CTG2
bM2H19
AC192473.1
finished
7 RP24-366D9
MMCHR14_CTG2
bN366D9
AC193220.1
finished
8 RP23-51D4
MMCHR14_CTG2
bM51D4
AC192089.5
finished
9 RP23-45E20
MMCHR14_CTG2
bM45E20
AC186193.2
finished
10 RP24-426N16
MMCHR14_CTG2
bN426N16
AC192331.1
finished
11 RP23-227N11
MMCHR14_CTG2
bM227N11
AC188088.1
finished
12 RP24-218O5
MMCHR14_CTG2
bN218O5
AC186381.2
finished
13 RP24-312N10
MMCHR14_CTG2
bN312N10
AC196039.1
finished
14 RP24-243P7
MMCHR14_CTG2
bN243P7
AC141630.3
finished
15 RP24-70M22
MMCHR14_CTG2
bN70M22
AC161870.4
finished
16 RP23-71L2
MMCHR14_CTG2
bM71L2
AC167722.2
finished
17 RP24-576O9
MMCHR14_CTG2
bN576O9
AC164114.2
finished
18 RP24-80K11
MMCHR14_CTG2
bN80K11
AC190173.1
finished
19 RP23-254B9
MMCHR14_CTG2
bM254B9
AC125198.4
finished
20 RP23-274E2
MMCHR14_CTG2
bM274E2
AC188089.1
finished
21 RP23-97D14
MMCHR14_CTG2
bM97D14
AC168071.4
finished
22 RP23-460G24
MMCHR14_CTG2
bM460G24
AC165952.4
finished
23 RP23-314N18
MMCHR14_CTG2
bM314N18
AC134588.5
finished
24 RP24-152K24
MMCHR14_CTG2
bN152K24
AC144775.2
finished
25 RP24-83L12
MMCHR14_CTG2
bN83L12
AC242684.3
finished
26 RP23-424N6
MMCHR14_CTG2
bM424N6
AC242738.2
finished
27 RP23-188F24
MMCHR14_CTG2
bM188F24
AC195265.1
finished
28 RP23-80K12
MMCHR14_CTG2
bM80K12
AC162942.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 174832 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192434.2 1 174832 +
174833 267616 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC131650.5 1 92784 -
267617 381810 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186757.2 1 114194 -
381811 499276 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC136642.4 50785 168250 +
499277 675722 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186378.2 59219 235664 +
675723 816342 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192473.1 1 140620 -
816343 832747 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC193220.1 1 16405 -
832748 1060048 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192089.5 1 227301 -
1060049 1157492 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186193.2 148372 245815 +
1157493 1224214 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC192331.1 1 66722 -
1224215 1367814 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC188088.1 1 143600 -
1367815 1516955 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC186381.2 1 149141 -
1516956 1570386 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC196039.1 1 53431 -
1570387 1718175 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC141630.3 1 147789 -
1718176 1848991 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC161870.4 1 130816 -
1848992 2052711 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC167722.2 29960 233679 +
2052712 2200466 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC164114.2 34478 182232 +
2200467 2281171 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC190173.1 1 80705 -
2281172 2424864 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC125198.4 1 143693 -
2424865 2636837 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC188089.1 1 211973 -
2636838 2807124 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC168071.4 100445 270731 +
2807125 2929401 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC165952.4 1 122277 -
2929402 3023616 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC134588.5 84743 178957 +
3023617 3171745 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC144775.2 2956 151084 +
3171746 3317089 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC242684.3 92853 238196 +
3317090 3317089 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 26 AC242738.2 74496 34121 -
3317090 3322089 27 N 5000 contig no
3322090 3529480 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 AC195265.1 1 207391 -
3529481 3596578 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 AC162942.5 1 67098 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP24-211P18
MMCHR14_CTG2
bN211P18
-
-
AC192434.2
finished
174832 RPCI-24 3' / 3'
174832 / 92784
- / -
69585
0.13
Identified
2014-09-03
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2 RP24-97G3
MMCHR14_CTG2
bN97G3
-
-
AC131650.5
finished
162369 RPCI-24 5' / 3'
1 / 114194
- / -
79571
0.01
Identified
2014-09-03
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3 RP23-388I12
MMCHR14_CTG2
bM388I12
-
-
AC186757.2
finished
193774 RPCI-23 5' / 5'
1 / 50785
- / -
50784
0
Identified
2014-09-03
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4 RP23-401J21
MMCHR14_CTG2
bM401J21
-
-
AC136642.4
finished
168250 RPCI-23 3' / 5'
168250 / 59219
- / -
59218
0.03
Identified
2014-09-03
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5 RP24-547N23
MMCHR14_CTG2
bN547N23
-
-
AC186378.2
finished
235664 RPCI-24 3' / 3'
235664 / 140620
- / -
68358
0
Identified
2014-09-03
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6 RP23-2H19
MMCHR14_CTG2
bM2H19
-
-
AC192473.1
finished
208978 RPCI-23 5' / 3'
1 / 16405
- / -
137043
0.91
Identified
2014-09-03
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Certificate rejected
7 RP24-366D9
MMCHR14_CTG2
bN366D9
-
-
AC193220.1
finished
154696 RPCI-24 5' / 3'
1 / 227301
- / -
16941
0
Identified
2014-09-03
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8 RP23-51D4
MMCHR14_CTG2
bM51D4
-
-
AC192089.5
finished
244242 RPCI-23 5' / 5'
1 / 148372
- / -
148366
0
Identified
2014-09-03
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9 RP23-45E20
MMCHR14_CTG2
bM45E20
-
-
AC186193.2
finished
245815 RPCI-23 3' / 3'
245815 / 66722
- / -
103078
0.02
Identified
2014-09-03
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10 RP24-426N16
MMCHR14_CTG2
bN426N16
-
-
AC192331.1
finished
169810 RPCI-24 5' / 3'
1 / 143600
- / -
71931
0.01
Identified
2014-09-03
fetch_ncbi...
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11 RP23-227N11
MMCHR14_CTG2
bM227N11
-
-
AC188088.1
finished
215531 RPCI-23 5' / 3'
1 / 149141
- / -
18366
0.02
Identified
2014-09-03
fetch_ncbi...
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12 RP24-218O5
MMCHR14_CTG2
bN218O5
-
-
AC186381.2
finished
167511 RPCI-24 5' / 3'
1 / 53431
- / -
116940
0.03
Identified
2014-09-03
fetch_ncbi...
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13 RP24-312N10
MMCHR14_CTG2
bN312N10
-
-
AC196039.1
finished
170379 RPCI-24 5' / 3'
1 / 147789
- / -
36285
0.69
Identified
2014-09-03
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Certificate approved
14 RP24-243P7
MMCHR14_CTG2
bN243P7
-
-
AC141630.3
finished
184075 RPCI-24 5' / 3'
1 / 130816
- / -
109032
0.69
Identified
2014-09-03
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Certificate approved
15 RP24-70M22
MMCHR14_CTG2
bN70M22
-
-
AC161870.4
finished
240578 RPCI-24 5' / 5'
1 / 29960
- / -
29959
0
Identified
2014-09-03
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16 RP23-71L2
MMCHR14_CTG2
bM71L2
-
-
AC167722.2
finished
233679 RPCI-23 3' / 5'
233679 / 34478
- / -
34476
0.08
Identified
2014-09-03
fetch_ncbi...
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17 RP24-576O9
MMCHR14_CTG2
bN576O9
-
-
AC164114.2
finished
182232 RPCI-24 3' / 3'
182232 / 80705
- / -
134772
0.02
Identified
2014-09-03
fetch_ncbi...
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18 RP24-80K11
MMCHR14_CTG2
bN80K11
-
-
AC190173.1
finished
215483 RPCI-24 5' / 3'
1 / 143693
- / -
61694
0.06
Identified
2014-09-03
fetch_ncbi...
humpub
 
19 RP23-254B9
MMCHR14_CTG2
bM254B9
-
-
AC125198.4
finished
205392 RPCI-23 5' / 3'
1 / 211973
- / -
897
0
Identified
2014-09-03
fetch_ncbi...
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20 RP23-274E2
MMCHR14_CTG2
bM274E2
-
-
AC188089.1
finished
212870 RPCI-23 5' / 5'
1 / 100445
- / -
100438
0.11
Identified
2014-09-03
fetch_ncbi...
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Certificate approved
21 RP23-97D14
MMCHR14_CTG2
bM97D14
-
-
AC168071.4
finished
270731 RPCI-23 3' / 3'
270731 / 122277
- / -
61139
0
Identified
2014-09-03
fetch_ncbi...
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22 RP23-460G24
MMCHR14_CTG2
bM460G24
-
-
AC165952.4
finished
183416 RPCI-23 5' / 5'
1 / 84743
- / -
84739
0.01
Identified
2014-09-03
fetch_ncbi...
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23 RP23-314N18
MMCHR14_CTG2
bM314N18
-
-
AC134588.5
finished
178957 RPCI-23 3' / 5'
178957 / 2956
- / -
2955
0
Identified
2014-09-03
fetch_ncbi...
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24 RP24-152K24
MMCHR14_CTG2
bN152K24
-
-
AC144775.2
finished
151084 RPCI-24 3' / 5'
151084 / 92853
- / -
92852
0
Identified
2014-09-03
fetch_ncbi...
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25 RP24-83L12
MMCHR14_CTG2
bN83L12
-
-
AC242684.3
finished
238196 RPCI-24 3' / 3'
238196 / 34121
- / -
131853
0.03
Identified
2011-10-28
find_overl...
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26 RP23-424N6
MMCHR14_CTG2
bM424N6
-
-
AC242738.2
finished
165197 RPCI-23 5' / 3'
74496 / 207391
- / -
74764
0.02
Identified
2011-10-28
find_overl...
humpub
 
27 RP23-188F24
MMCHR14_CTG2
bM188F24
-
-
AC195265.1
finished
207391 RPCI-23 5' / 3'
1 / 67098
- / -
160846
0
Identified
2014-09-03
fetch_ncbi...
humpub
 
28 RP23-80K12
MMCHR14_CTG2
bM80K12
-
-
AC162942.5
finished
227944 RPCI-23        

Statistics

Clone Summary

Number of gaps
0
Total clones
28
Clone HTGS Phases
finished
28
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,056,882
Total finished length of fin clones w/ overlap
5,609,076
Total finished length of fin clones w/o overlap
3,552,194
Total overlap length of fin+unfin clones
2,056,882
Total finished length of fin+unfin clones w/ overlap
5,609,076
Total finished length of fin+unfin clones w/o overlap
3,552,194

AGP errors

# rank accession seq_start seq_end strand error date
1 26 AC242738.2 74,496 34,121 -1 For sequence AC242738.2 chr_length = -40374 which is less than 1! (start = 74496 end = 34121) This sequence may be redundant, or its overlaps are wrong Wed, 03 Sep 2014 00:30

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Other links

* quick link - http://q.sanger.ac.uk/m1im6rvb