ChromoView - clone / Assembly sequencing status

S.harrisii: Sub region Tas_MHC (TPF updated: 2011-03-23)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 VMRC49-158O23
Contig
bSHC158O23
EPN details
FQ482137.8
finished
2 VMRC49-22M16
Contig
bSHC22M16
EPN details
FQ482140.2
finished
  GAP (type-4) length 50000 bps    
4 VMRC49-491I11
Contig
bSHC491I11
EPN details
FQ482142.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 139315 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FQ482137.8 1 139315 -
139316 194668 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FQ482140.2 79856 135208 +
194669 244668 3 N 50000 contig no
244669 368851 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 FQ482142.7 1 124183 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 VMRC49-158O23
Contig
bSHC158O23
EPN details
Analysed
26-JAN-11
FQ482137.8
finished
139315 VMRC49 5' / 5'
1 / 79856
- / -
79876
0
Identified
2011-03-23
find_overl...
humpub
 
2 VMRC49-22M16
Contig
bSHC22M16
EPN details
Analysed
23-NOV-10
FQ482140.2
finished
135208 VMRC49        
  GAP (type-4) length 50000 bps                  
4 VMRC49-491I11
Contig
bSHC491I11
EPN details
Analysed
13-JAN-11
FQ482142.7
finished
124183 VMRC49        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-4
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
79,876
Total finished length of fin clones w/ overlap
398,706
Total finished length of fin clones w/o overlap
318,830
Total overlap length of fin+unfin clones
79,876
Total finished length of fin+unfin clones w/ overlap
398,706
Total finished length of fin+unfin clones w/o overlap
318,830

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Other links

* quick link - http://q.sanger.ac.uk/esmbe9l5