ChromoView - clone / Assembly sequencing status

Wallaby: Sub region WALLABY_MHC (TPF updated: 2010-06-14)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 MEKBa-178C11
Contig
bME178C11
FP016133.5
finished
2 MEKBa-268H24
Contig
bME268H24
CU463175.2
finished
3 MEKBa-244N6
Contig
bME244N6
CU464032.8
finished
4 MEKBa-280J10
Contig
bME280J10
CU467811.3
finished
5 MEKBa-180L7
Contig
bME180L7
CU468126.7
finished
  GAP (type-4) length 5000 bps    
7 MEKBa-243M2
Contig
bME243M2
CU463026.11
finished
8 MEKBa-155M2
Contig
bME155M2
CU463961.4
finished
  GAP (type-4) length 5000 bps    
10 MEKBa-466E14
Contig
bME466E14
CU463227.3
finished
11 MEKBa-288B16
Contig
bME288B16
CU463226.3
finished
12 MEKBa-47C8
Contig
bME47C8
CU464026.9
finished
13 MEKBa-293I1
Contig
bME293I1
FP104545.5
finished
14 MEKBa-242G6
Contig
bME242G6
CU463018.3
finished
  GAP (type-4) length 5000 bps    
16 MEKBa-241L16
Contig
bME241L16
CU463962.2
finished
17 MEKBa-146G20
Contig
bME146G20
CU466525.5
finished
18 MEKBa-6E22
Contig
bME6E22
CU463963.6
finished
19 MEKBa-7D13
Contig
bME7D13
CU464027.1
finished
20 MEKBa-93J23
Contig
bME93J23
CU463939.5
finished
21 MEKBa-49O16
Contig
bME49O16
CU463996.2
finished
  GAP (type-4) length 5000 bps    
23 MEKBa-210A8
Contig
bME210A8
CU464025.2
finished
  GAP (type-4) length 5000 bps    
25 MEKBa-458G11
Contig
bME458G11
FP236731.3
finished
26 MEKBa-198J4
Contig
bME198J4
FP236847.5
finished
27 MEKBa-460F7
Contig
bME460F7
FP236778.6
finished
28 MEKBa-163H18
Contig
bME163H18
FP104544.9
finished
  GAP (type-4) length 5000 bps    
30 MEKBa-575K20
Contig
bME575K20
FP236744.11
finished
31 MEKBa-5M36
Contig
bME5M36
FP236732.3
finished
32 6605
Contig
6605
CR925799.3
finished
  GAP (type-4) length 5000 bps    
34 MEKBa-310P15
Contig
bME310P15
FP236629.3
finished
35 MEKBa-455
E20
bME455
FP236651.7
finished
36 MEKBa-231N5
Contig
bME231N5
FP236650.6
finished
  GAP (type-4) length 5000 bps    
38
Contig
CU463016
CU463016.2
finished
  GAP (type-4) length 5000 bps    
40
Contig
CU463024
CU463024.7
finished
  GAP (type-4) length 5000 bps    
42
Contig
CU302415
CU302415.4
finished
  GAP (type-4) length 5000 bps    
44
Contig
CU463152
CU463152.3
finished
  GAP (type-4) length 5000 bps    
46
Contig
FP236617
FP236617.4
finished
  GAP (type-4) length 5000 bps    
48
Contig
CU463025
CU463025.2
finished
  GAP (type-4) length 5000 bps    
50
Contig
CU464023
CU464023.3
finished
  GAP (type-4) length 5000 bps    
52
Contig
CU302374
CU302374.5
finished
  GAP (type-4) length 5000 bps    
54
Contig
CU463129
CU463129.4
finished
  GAP (type-4) length 5000 bps    
56
Contig
CU302407
CU302407.3
finished
  GAP (type-4) length 5000 bps    
58
Contig
CU302408
CU302408.8
finished
  GAP (type-4) length 5000 bps    
60
Contig
CU302409
CU302409.2
finished
  GAP (type-4) length 5000 bps    
62
Contig
CU463997
CU463997.13
finished
  GAP (type-4) length 5000 bps    
64
Contig
CU463023
CU463023.2
finished
  GAP (type-4) length 5000 bps    
66
Contig
CU463022
CU463022.3
finished
  GAP (type-4) length 5000 bps    
68
Contig
CU464024
CU464024.4
finished
  GAP (type-4) length 5000 bps    
70
Contig
CU457750
CU457750.11
finished
  GAP (type-4) length 5000 bps    
72
Contig
CU463019
CU463019.3
finished
  GAP (type-4) length 5000 bps    
74
Contig
CU302406
CU302406.7
finished
  GAP (type-4) length 5000 bps    
76
Contig
CU302372
CU302372.2
finished
  GAP (type-4) length 5000 bps    
78
Contig
CU302373
CU302373.4
finished
  GAP (type-4) length 5000 bps    
80
Contig
CU463017
CU463017.2
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 170945 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016133.5 1 170945 -
170946 327917 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU463175.2 19717 176688 +
327918 513072 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU464032.8 5478 190632 +
513073 518072 4 N 5000 No overlap in database    
518073 670827 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 CU467811.3 1 152755 +
670828 829252 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 6 CU468126.7 62 158486 +
829253 834252 7 N 5000 contig no
834253 982853 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CU463026.11 31859 180459 -
982854 1123148 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CU463961.4 1 140295 +
1123149 1128148 10 N 5000 contig no
1128149 1173436 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 CU463227.3 124287 169574 -
1173437 1336266 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 CU463226.3 1 162830 +
1336267 1341266 13 N 5000 No overlap in database    
1341267 1520487 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 CU464026.9 1 179221 +
1520488 1656123 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 FP104545.5 2001 137636 -
1656124 1836929 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 16 CU463018.3 1 180806 -
1836930 1841929 17 N 5000 contig no
1841930 2023503 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU463962.2 1 181574 +
2023504 2164423 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU466525.5 31475 172394 +
2164424 2235714 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU463963.6 1 71291 -
2235715 2375996 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU464027.1 38757 179038 +
2375997 2462281 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU463939.5 20550 106834 -
2462282 2620947 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 23 CU463996.2 1 158666 +
2620948 2625947 24 N 5000 contig no
2625948 2782352 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CU464025.2 1 156405 +
2782353 2787352 26 N 5000 contig no
2787353 2931725 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 FP236731.3 1 144373 +
2931726 2936725 28 N 5000 No overlap in database    
2936726 3026273 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 FP236847.5 1 89548 +
3026274 3201887 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 30 FP236778.6 1 175614 +
3201888 3206887 31 N 5000 No overlap in database    
3206888 3398373 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 FP104544.9 1 191486 +
3398374 3403373 33 N 5000 contig no
3403374 3566173 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 FP236744.11 1 162800 -
3566174 3705748 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 FP236732.3 1 139575 -
3705749 3772223 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 36 CR925799.3 1 66475 -
3772224 3777223 37 N 5000 contig no
3777224 3951917 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 FP236629.3 1 174694 -
3951918 4056137 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 FP236651.7 47092 151311 +
4056138 4061137 40 N 5000 No overlap in database    
4061138 4199407 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 FP236650.6 1 138270 +
4199408 4204407 42 N 5000 contig no
4204408 4363091 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 CU463016.2 1 158684 +
4363092 4368091 44 N 5000 contig no
4368092 4524207 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CU463024.7 1 156116 +
4524208 4529207 46 N 5000 contig no
4529208 4689808 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CU302415.4 1 160601 +
4689809 4694808 48 N 5000 contig no
4694809 4865149 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CU463152.3 1 170341 +
4865150 4870149 50 N 5000 contig no
4870150 5033333 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 FP236617.4 1 163184 +
5033334 5038333 52 N 5000 contig no
5038334 5201092 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 53 CU463025.2 1 162759 +
5201093 5206092 54 N 5000 contig no
5206093 5321173 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 55 CU464023.3 1 115081 +
5321174 5326173 56 N 5000 contig no
5326174 5501445 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 CU302374.5 1 175272 +
5501446 5506445 58 N 5000 contig no
5506446 5677934 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 CU463129.4 1 171489 +
5677935 5682934 60 N 5000 contig no
5682935 5845264 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 CU302407.3 1 162330 +
5845265 5850264 62 N 5000 contig no
5850265 6012863 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 CU302408.8 1 162599 +
6012864 6017863 64 N 5000 contig no
6017864 6177707 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 CU302409.2 1 159844 +
6177708 6182707 66 N 5000 contig no
6182708 6364639 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 CU463997.13 1 181932 +
6364640 6369639 68 N 5000 contig no
6369640 6533971 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 69 CU463023.2 1 164332 +
6533972 6538971 70 N 5000 contig no
6538972 6698933 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 CU463022.3 1 159962 +
6698934 6703933 72 N 5000 contig no
6703934 6871776 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 CU464024.4 1 167843 +
6871777 6876776 74 N 5000 contig no
6876777 7043233 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 CU457750.11 1 166457 +
7043234 7048233 76 N 5000 contig no
7048234 7181834 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CU463019.3 1 133601 +
7181835 7186834 78 N 5000 contig no
7186835 7356429 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CU302406.7 1 169595 +
7356430 7361429 80 N 5000 contig no
7361430 7547557 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 CU302372.2 1 186128 +
7547558 7552557 82 N 5000 contig no
7552558 7706412 83 FClick to retrieve finished assembled sequence in green bar: rank(s) 83 - 83 CU302373.4 1 153855 +
7706413 7711412 84 N 5000 contig no
7711413 7863572 85 FClick to retrieve finished assembled sequence in green bar: rank(s) 85 - 85 CU463017.2 1 152160 +

Details

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Statistics

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Clone Summary

Number of gaps
29
Gap types
type-4
29
Total clones
51
Clone HTGS Phases
finished
51
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
737,088
Total finished length of fin clones w/ overlap
8,430,660
Total finished length of fin clones w/o overlap
7,693,572
Total overlap length of fin+unfin clones
737,088
Total finished length of fin+unfin clones w/ overlap
8,430,660
Total finished length of fin+unfin clones w/o overlap
7,693,572

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Other links

* quick link - http://q.sanger.ac.uk/x58w3vlj