ChromoView - clone / Assembly sequencing status

Gorilla: Sub region GORILLA_FOSMIDS (TPF updated: 2010-01-11)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 FKGG_157O01
GH
Cl/Pr FKGG_157O01/fKGG157O1 swap
EPN details
FP245428.7
unfinished
  GAP (type-3) length 3000 bps    
3 FKGG_176D13
GH
Cl/Pr FKGG_176D13/fKGG176D13 swap
EPN details
FP245403.9
finished
4 FKG_516E12
GH
Cl/Pr FKG_516E12/fKGG516E12 swap
EPN details
FP245407.5
finished
  GAP (type-3) length 1000 bps    
6 FKG_440K03
apobec
Cl/Pr FKG_440K03/fKGG440K3 swap
EPN details
FP245405.3
finished
  GAP (type-3) length 15000 bps    
8 FKGG_188D11
apobec
Cl/Pr FKGG_188D11/fKGG188D11 swap
EPN details
FP245429.5
finished
9 FKG_476N03
apobec
Cl/Pr FKG_476N03/fKGG476N3 swap
EPN details
FP245534.1
finished
10 FKGG_118D01
apobec
Cl/Pr FKGG_118D01/fKGG118D1 swap
EPN details
FP245402.5
finished
11 FKGG_169N07
apobec
Cl/Pr FKGG_169N07/fKGG169N7 swap
EPN details
FP245411.8
contiguous
  GAP (type-3) length 1000 bps    
13 FKG_500I18
PRMs
Cl/Pr FKG_500I18/fKGG500I18 swap
EPN details
FP245437.3
finished
  GAP (type-3) length 1000 bps    
15 FKG_497H12
APOL
Cl/Pr FKG_497H12/fKGG497H12 swap
EPN details
FP245406.1
finished
16 FKG_330D11
APOL
Cl/Pr FKG_330D11/fKGG330D11 swap
EPN details
FP245434.4
finished
17 FKGG_19G08
APOL
Cl/Pr FKGG_19G08/fKGG19G8 swap
EPN details
FP245430.4
finished
  GAP (type-3) length 1000 bps    
19 CH1277-570G20
MHY15
fKGG570G20
EPN details
FP245408.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 53000 2 N 3000 contig no
53001 93435 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 FP245403.9 1 40435 +
93436 117200 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 FP245407.5 1 23765 -
117201 118200 5 N 1000 contig no
118201 156996 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 FP245405.3 1 38796 +
156997 171996 7 N 15000 contig no
171997 210182 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 FP245429.5 1 38186 +
210183 231895 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 FP245534.1 1 21713 -
231896 267321 10 F FP245402.5
Double 3-prime join to 'FP245402.5'
1 35426 +
267322 272321 11 N 5000 Bad overlap - double 3 prime join    
272322 299434 12 A FP245411.8 1385 28497 +
299435 300434 13 N 1000 contig no
300435 338316 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 FP245437.3 1 37882 +
338317 339316 15 N 1000 contig no
339317 366354 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 FP245406.1 1 27038 +
366355 386983 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 FP245434.4 7719 28347 +
386984 405956 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 18 FP245430.4 1 18973 -
405957 406956 19 N 1000 contig no
406957 443543 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 FP245408.7 1 36587 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 FKGG_157O01
GH
Cl/Pr FKGG_157O01/fKGG157O1 swap
EPN details
Project closed
15-JUL-09
FP245428.7
unfinished
30035 -        
  GAP (type-3) length 3000 bps                  
3 FKGG_176D13
GH
Cl/Pr FKGG_176D13/fKGG176D13 swap
EPN details
Analysed
04-JUL-09
FP245403.9
finished
40435 - 3' / 3'
40435 / 23765
- / -
6974
0
Identified
2010-01-11
find_overl...
humpub
 
4 FKG_516E12
GH
Cl/Pr FKG_516E12/fKGG516E12 swap
EPN details
Analysed
04-JUN-09
FP245407.5
finished
30739 -        
  GAP (type-3) length 1000 bps                  
6 FKG_440K03
apobec
Cl/Pr FKG_440K03/fKGG440K3 swap
EPN details
Analysed
09-MAY-09
FP245405.3
finished
38796 -        
  GAP (type-3) length 15000 bps                  
8 FKGG_188D11
apobec
Cl/Pr FKGG_188D11/fKGG188D11 swap
EPN details
Analysed
24-JUN-09
FP245429.5
finished
38186 - 3' / 3'
38186 / 21713
- / -
15449
0
Identified
2010-01-11
find_overl...
humpub
 
9 FKG_476N03
apobec
Cl/Pr FKG_476N03/fKGG476N3 swap
EPN details
Analysed
30-APR-09
FP245534.1
finished
37162 - 5' / 3'
1 / 33150
- / 1931
353
9.35
Identified
2010-01-11
find_overl...
humpub
 
10 FKGG_118D01
apobec
Cl/Pr FKGG_118D01/fKGG118D1 swap
EPN details
Analysed
27-MAY-09
FP245402.5
finished
35426 - 3' / 5'
35426 / 1385
- / -
1384
0.07
Identified
2010-01-11
find_overl...
humpub
 
11 FKGG_169N07
apobec
Cl/Pr FKGG_169N07/fKGG169N7 swap
EPN details
Project closed
15-JUL-09
FP245411.8
contiguous
28497 -        
  GAP (type-3) length 1000 bps                  
13 FKG_500I18
PRMs
Cl/Pr FKG_500I18/fKGG500I18 swap
EPN details
Analysed
21-MAY-09
FP245437.3
finished
37882 -        
  GAP (type-3) length 1000 bps                  
15 FKG_497H12
APOL
Cl/Pr FKG_497H12/fKGG497H12 swap
EPN details
Analysed
17-APR-09
FP245406.1
finished
31369 - 3' / 5'
27038 / 7719
4331 / 7428
297
20.88
Identified
2010-01-11
find_overl...
humpub
 
16 FKG_330D11
APOL
Cl/Pr FKG_330D11/fKGG330D11 swap
EPN details
Analysed
21-MAY-09
FP245434.4
finished
31441 - 3' / 3'
28347 / 18973
3094 / 11409
316
15.51
Identified
2010-01-11
find_overl...
humpub
 
17 FKGG_19G08
APOL
Cl/Pr FKGG_19G08/fKGG19G8 swap
EPN details
Analysed
04-JUN-09
FP245430.4
finished
30692 -        
  GAP (type-3) length 1000 bps                  
19 CH1277-570G20
MHY15
fKGG570G20
EPN details
Analysed
30-JUN-09
FP245408.7
finished
36587 CHORI-1277        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-3
6
Total clones
13
Clone HTGS Phases
contiguous
1
finished
11
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
23,389
Total finished length of fin clones w/ overlap
388,715
Total finished length of fin clones w/o overlap
365,326
Total overlap length of fin+unfin clones
24,773
Total finished length of fin+unfin clones w/ overlap
447,247
Total finished length of fin+unfin clones w/o overlap
422,474

Dovetails

# rank accession status length date
1 10 FP245402.5 unfinished 1,931 Wed, 22 Oct 2014 23:02
2 15 FP245406.1 unfinished 4,331 Wed, 22 Oct 2014 23:02
3 16 FP245434.4 unfinished 7,428 Wed, 22 Oct 2014 23:02
4 16 FP245434.4 unfinished 3,094 Wed, 22 Oct 2014 23:02
5 17 FP245430.4 unfinished 11,409 Wed, 22 Oct 2014 23:02

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Other links

* quick link - http://q.sanger.ac.uk/u3wcgnpa