ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_17 (TPF updated: 2014-09-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-272E10
Hschr17_random_ctg3
bA272E10
AC011841.7
finished
2 ABC8-43092500B7
Hschr17_random_ctg3
f8A43092500B7
AC241542.2
finished
  GAP (type-3) length unknown    
4
Hschr17_random_ctg4
ABBA01017887
ABBA01017887.1
finished
  GAP (type-2) length 3901 bps    
6
Hschr17_random_ctg4
ABBA01017888
ABBA01017888.1
finished
  GAP (type-2) length 6504 bps    
8
Hschr17_random_ctg4
ABBA01017889
ABBA01017889.1
finished
  GAP (type-2) length 20 bps    
10
Hschr17_random_ctg4
ABBA01017890
ABBA01017890.1
finished
  GAP (type-2) length 20 bps    
12
Hschr17_random_ctg4
ABBA01017891
ABBA01017891.1
finished
  GAP (type-2) length 20 bps    
14
Hschr17_random_ctg4
ABBA01017892
ABBA01017892.1
finished
  GAP (type-2) length 20 bps    
16
Hschr17_random_ctg4
ABBA01017893
ABBA01017893.1
finished
  GAP (type-2) length 20 bps    
18
Hschr17_random_ctg4
ABBA01017894
ABBA01017894.1
finished
  GAP (type-2) length 852 bps    
20
Hschr17_random_ctg4
ABBA01017895
ABBA01017895.1
finished
  GAP (type-3) length unknown    
22
Hschr17_random_ctg5
AUXG01000401
AUXG01000401.1
finished
  GAP (type-2) length 1843 bps    
24
Hschr17_random_ctg5
AUXG01000402
AUXG01000402.1
finished
  GAP (type-2) length 25 bps    
26
Hschr17_random_ctg5
AUXG01000403
AUXG01000403.1
finished
  GAP (type-2) length 2045 bps    
28
Hschr17_random_ctg5
AUXG01000404
AUXG01000404.1
finished
  GAP (type-2) length 1810 bps    
30
Hschr17_random_ctg5
AUXG01000405
AUXG01000405.1
finished
  GAP (type-2) length 221 bps    
32
Hschr17_random_ctg5
AUXG01000406
AUXG01000406.1
finished
  GAP (type-2) length 25 bps    
34
Hschr17_random_ctg5
AUXG01000407
AUXG01000407.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 149386 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC011841.7 25203 174588 -
149387 185591 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC241542.2 1 36205 +
185592 235591 3 N 50000 contig no
235592 242171 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 ABBA01017887.1 1 6580 +
242172 246072 5 N 3901 contig yes # PAIRED ENDS
246073 249291 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 ABBA01017888.1 1 3219 +
249292 255795 7 N 6504 contig yes # PAIRED ENDS
255796 287219 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 8 ABBA01017889.1 1 31424 +
287220 287239 9 N 20 contig yes # PAIRED ENDS
287240 290530 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 10 ABBA01017890.1 1 3291 +
290531 290550 11 N 20 contig yes # PAIRED ENDS
290551 292982 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 12 ABBA01017891.1 1 2432 +
292983 293002 13 N 20 contig yes # PAIRED ENDS
293003 337687 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 ABBA01017892.1 1 44685 +
337688 337707 15 N 20 contig yes # PAIRED ENDS
337708 394049 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 ABBA01017893.1 1 56342 +
394050 394069 17 N 20 contig yes # PAIRED ENDS
394070 469630 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 ABBA01017894.1 1 75561 +
469631 470482 19 N 852 contig yes # PAIRED ENDS
470483 516430 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 ABBA01017895.1 1 45948 +
516431 566430 21 N 50000 contig no
566431 655091 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AUXG01000401.1 1 88661 +
655092 656934 23 N 1843 contig yes # PAIRED ENDS
656935 658221 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AUXG01000402.1 1 1287 +
658222 658246 25 N 25 contig yes # PAIRED ENDS
658247 659907 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 AUXG01000403.1 1 1661 +
659908 661952 27 N 2045 contig yes # PAIRED ENDS
661953 666543 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 AUXG01000404.1 1 4591 +
666544 668353 29 N 1810 contig yes # PAIRED ENDS
668354 674169 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AUXG01000405.1 1 5816 +
674170 674390 31 N 221 contig yes # PAIRED ENDS
674391 675793 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AUXG01000406.1 1 1403 +
675794 675818 33 N 25 contig yes # PAIRED ENDS
675819 678981 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 34 AUXG01000407.1 1 3163 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-272E10
Hschr17_random_ctg3
bA272E10
-
-
AC011841.7
finished
174588 RPCI-11.1 5' / 5'
25203 / 1
- / -
25185
2.36
Identified
2014-09-02
fetch_ncbi...
humpub
 
2 ABC8-43092500B7
Hschr17_random_ctg3
f8A43092500B7
-
-
AC241542.2
finished
36205 ABC8        
  GAP (type-3) length unknown                  
4
Hschr17_random_ctg4
ABBA01017887
-
-
ABBA01017887.1
finished
6580 -        
  GAP (type-2) length 3901 bps                  
6
Hschr17_random_ctg4
ABBA01017888
-
-
ABBA01017888.1
finished
3219 -        
  GAP (type-2) length 6504 bps                  
8
Hschr17_random_ctg4
ABBA01017889
-
-
ABBA01017889.1
finished
31424 -        
  GAP (type-2) length 20 bps                  
10
Hschr17_random_ctg4
ABBA01017890
-
-
ABBA01017890.1
finished
3291 -        
  GAP (type-2) length 20 bps                  
12
Hschr17_random_ctg4
ABBA01017891
-
-
ABBA01017891.1
finished
2432 -        
  GAP (type-2) length 20 bps                  
14
Hschr17_random_ctg4
ABBA01017892
-
-
ABBA01017892.1
finished
44685 -        
  GAP (type-2) length 20 bps                  
16
Hschr17_random_ctg4
ABBA01017893
-
-
ABBA01017893.1
finished
56342 -        
  GAP (type-2) length 20 bps                  
18
Hschr17_random_ctg4
ABBA01017894
-
-
ABBA01017894.1
finished
75561 -        
  GAP (type-2) length 852 bps                  
20
Hschr17_random_ctg4
ABBA01017895
-
-
ABBA01017895.1
finished
45948 -        
  GAP (type-3) length unknown                  
22
Hschr17_random_ctg5
AUXG01000401
-
-
AUXG01000401.1
finished
88661 -        
  GAP (type-2) length 1843 bps                  
24
Hschr17_random_ctg5
AUXG01000402
-
-
AUXG01000402.1
finished
1287 -        
  GAP (type-2) length 25 bps                  
26
Hschr17_random_ctg5
AUXG01000403
-
-
AUXG01000403.1
finished
1661 -        
  GAP (type-2) length 2045 bps                  
28
Hschr17_random_ctg5
AUXG01000404
-
-
AUXG01000404.1
finished
4591 -        
  GAP (type-2) length 1810 bps                  
30
Hschr17_random_ctg5
AUXG01000405
-
-
AUXG01000405.1
finished
5816 -        
  GAP (type-2) length 221 bps                  
32
Hschr17_random_ctg5
AUXG01000406
-
-
AUXG01000406.1
finished
1403 -        
  GAP (type-2) length 25 bps                  
34
Hschr17_random_ctg5
AUXG01000407
-
-
AUXG01000407.1
finished
3163 -        

Statistics

Clone Summary

Number of gaps
16
Gap types
type-2
14
type-3
2
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
25,185
Total finished length of fin clones w/ overlap
586,857
Total finished length of fin clones w/o overlap
561,672
Total overlap length of fin+unfin clones
25,185
Total finished length of fin+unfin clones w/ overlap
586,857
Total finished length of fin+unfin clones w/o overlap
561,672

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Other links

* quick link - http://q.sanger.ac.uk/v2f3knks