ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_9 (TPF updated: 2014-04-25)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 ABC16-1811N6
Hschr9_UNLOCALIZED_ctg1
f16A1811N6
AC240743.2
finished
  GAP (type-3) length unknown    
3 WI2-1195M23
Hschr9_UNLOCALIZED_ctg2
fW1195M23
AC174064.1
finished
  GAP (type-3) length unknown    
5 RP11-55J24
Hschr9_UNLOCALIZED_ctg3
bA55J24
EPN details
AL162252.17
finished
  GAP (type-3) length unknown    
7 ABC13-48906800A9
Hschr9_UNLOCALIZED_ctg4
f13A48906800A9
AC241982.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 40062 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC240743.2 1 40062 +
40063 90062 2 N 50000 contig no
90063 128116 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AC174064.1 1 38054 +
128117 178116 4 N 50000 contig no
178117 354961 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL162252.17 1 176845 +
354962 404961 6 N 50000 contig no
404962 444011 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC241982.2 1 39050 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 ABC16-1811N6
Hschr9_UNLOCALIZED_ctg1
f16A1811N6
-
-
AC240743.2
finished
40062 ABC16        
  GAP (type-3) length unknown                  
3 WI2-1195M23
Hschr9_UNLOCALIZED_ctg2
fW1195M23
-
-
AC174064.1
finished
38054 Whitehead fosmid        
  GAP (type-3) length unknown                  
5 RP11-55J24
Hschr9_UNLOCALIZED_ctg3
bA55J24
EPN details
Analysed
10-MAR-01
AL162252.17
finished
176845 RPCI-11.1        
  GAP (type-3) length unknown                  
7 ABC13-48906800A9
Hschr9_UNLOCALIZED_ctg4
f13A48906800A9
-
-
AC241982.2
finished
39050 ABC13        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
294,011
Total finished length of fin clones w/o overlap
294,011
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
294,011
Total finished length of fin+unfin clones w/o overlap
294,011

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Other links

* quick link - http://q.sanger.ac.uk/osbglxw9