ChromoView - clone / Assembly sequencing status

Human: Sub region UNPL_1 (TPF updated: 2014-04-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-782C8
Hschr1_ctg1_UNLOCALIZED
bA782C8
EPN details
BX571672.10
finished
  GAP (type-3) length unknown    
3 CH17-240N20
Hschr1_ctg2_UNLOCALIZED
bMO240N20
EPN details
FP325342.7
finished
  GAP (type-3) length unknown    
5 RP4-813B7
Hschr1_ctg3_UNLOCALIZED
dJ813B7
EPN details
AL137861.5
finished
  GAP (type-3) length unknown    
7 RP11-28O7
Hschr1_ctg4_UNLOCALIZED
bA28O7
AC129782.3
finished
  GAP (type-3) length unknown    
9 RP5-875J12
Hschr1_ctg5_UNLOCALIZED
Cl/Pr dJ875J12/bA533O1 swap
EPN details
BX119317.2
finished
  GAP (type-3) length unknown    
11 2315K9
Hschr1_ctg6_UNLOCALIZED
2315K9
AC240274.2
finished
  GAP (type-3) length unknown    
13 RP11-400J9
Hschr1_ctg7_UNLOCALIZED
bA400J9
AC010098.8
finished
  GAP (type-3) length unknown    
15 WI2-3206N8
Hschr1_ctg8_UNLOCALIZED
fW3206N8
AC213203.1
finished
  GAP (type-3) length unknown    
17 ABC11-47355400P13
Hschr1_ctg9_UNLOCALIZED
f11A47355400P13
AC216094.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 175055 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX571672.10 1 175055 +
175056 225055 2 N 50000 contig no
225056 257087 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 FP325342.7 1 32032 +
257088 307087 4 N 50000 contig no
307088 434769 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AL137861.5 1 127682 +
434770 484769 6 N 50000 contig no
484770 551629 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC129782.3 1 66860 +
551630 601629 8 N 50000 contig no
601630 641805 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 BX119317.2 1 40176 +
641806 691805 10 N 50000 contig no
691806 734015 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 AC240274.2 1 42210 +
734016 784015 12 N 50000 contig no
784016 960058 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 AC010098.8 1 176043 +
960059 1010058 14 N 50000 contig no
1010059 1050803 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AC213203.1 1 40745 +
1050804 1100803 16 N 50000 contig no
1100804 1142520 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 AC216094.3 1 41717 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-782C8
Hschr1_ctg1_UNLOCALIZED
bA782C8
EPN details
Submitted to EMBL
12-JAN-09
BX571672.10
finished
175055 RPCI-11.3        
  GAP (type-3) length unknown                  
3 CH17-240N20
Hschr1_ctg2_UNLOCALIZED
bMO240N20
EPN details
Analysed
15-APR-11
FP325342.7
finished
32032 CHORI-17        
  GAP (type-3) length unknown                  
5 RP4-813B7
Hschr1_ctg3_UNLOCALIZED
dJ813B7
EPN details
Submitted to EMBL
01-NOV-00
AL137861.5
finished
127682 RPCI-4        
  GAP (type-3) length unknown                  
7 RP11-28O7
Hschr1_ctg4_UNLOCALIZED
bA28O7
-
-
AC129782.3
finished
66860 RPCI-11.1        
  GAP (type-3) length unknown                  
9 RP5-875J12
Hschr1_ctg5_UNLOCALIZED
Cl/Pr dJ875J12/bA533O1 swap
EPN details
Analysed
31-JAN-03
BX119317.2
finished
40176 RPCI-5        
  GAP (type-3) length unknown                  
11 2315K9
Hschr1_ctg6_UNLOCALIZED
2315K9
-
-
AC240274.2
finished
42210 -        
  GAP (type-3) length unknown                  
13 RP11-400J9
Hschr1_ctg7_UNLOCALIZED
bA400J9
-
-
AC010098.8
finished
176043 RPCI-11.2        
  GAP (type-3) length unknown                  
15 WI2-3206N8
Hschr1_ctg8_UNLOCALIZED
fW3206N8
-
-
AC213203.1
finished
40745 Whitehead fosmid        
  GAP (type-3) length unknown                  
17 ABC11-47355400P13
Hschr1_ctg9_UNLOCALIZED
f11A47355400P13
-
-
AC216094.3
finished
41717 ABC11        

Statistics

Clone Summary

Number of gaps
8
Gap types
type-3
8
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
742,520
Total finished length of fin clones w/o overlap
742,520
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
742,520
Total finished length of fin+unfin clones w/o overlap
742,520

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Other links

* quick link - http://q.sanger.ac.uk/x46o4t2g