ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_U (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-281G7
DrchrU_MHC-II_FPC_ctg2596
zFD281G7
EPN details
FP016177.1
finished
2 CH73-126P21
DrchrU_MHC-II_FPC_ctg2596
zH126P21
EPN details
FP015875.13
finished
3 CH73-370G22
DrchrU_MHC-II_FPC_ctg2596
zH370G22
EPN details
FP016145.14
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 35568 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016177.1 1 35568 +
35569 144121 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015875.13 1 108553 -
144122 213446 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016145.14 35389 104713 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-281G7
DrchrU_MHC-II_FPC_ctg2596
zFD281G7
EPN details
Analysed
11-DEC-08
FP016177.1
finished
35568 CHORI1073 3' / 3'
35568 / 108553
- / -
10412
0
Identified
2014-10-25
fetch_ncbi...
humpub
 
2 CH73-126P21
DrchrU_MHC-II_FPC_ctg2596
zH126P21
EPN details
Analysed
08-MAY-09
FP015875.13
finished
118965 CHORI-73 5' / 5'
1 / 35389
- / -
35305
0.46
Identified
2014-10-25
fetch_ncbi...
humpub
 
3 CH73-370G22
DrchrU_MHC-II_FPC_ctg2596
zH370G22
EPN details
Analysed
25-AUG-09
FP016145.14
finished
104713 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
45,717
Total finished length of fin clones w/ overlap
259,246
Total finished length of fin clones w/o overlap
213,529
Total overlap length of fin+unfin clones
45,717
Total finished length of fin+unfin clones w/ overlap
259,246
Total finished length of fin+unfin clones w/o overlap
213,529

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Other links

* quick link - http://q.sanger.ac.uk/cxexjmfq