ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_U (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-193D8
DrchrU_MHC-I_FPC_ctg1623
zH193D8
EPN details
FP101915.8
finished
2 CH73-264I18
DrchrU_MHC-I_FPC_ctg1623
zH264I18
EPN details
FP016234.5
finished
3 CH73-161N3
DrchrU_MHC-I_FPC_ctg1623
zH161N3
EPN details
CU984580.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 51491 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP101915.8 31040 82530 -
51492 168284 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP016234.5 1 116793 -
168285 173284 3 N 5000 No overlap in database    
173285 318384 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CU984580.15 1 145100 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-193D8
DrchrU_MHC-I_FPC_ctg1623
zH193D8
EPN details
Analysed
14-MAY-09
FP101915.8
finished
82530 CHORI-73 5' / 3'
31040 / 116793
- / -
31039
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CH73-264I18
DrchrU_MHC-I_FPC_ctg1623
zH264I18
EPN details
Analysed
28-MAR-09
FP016234.5
finished
116793 CHORI-73        
3 CH73-161N3
DrchrU_MHC-I_FPC_ctg1623
zH161N3
EPN details
Analysed
21-OCT-09
CU984580.15
finished
145100 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
31,039
Total finished length of fin clones w/ overlap
344,423
Total finished length of fin clones w/o overlap
313,384
Total overlap length of fin+unfin clones
31,039
Total finished length of fin+unfin clones w/ overlap
344,423
Total finished length of fin+unfin clones w/o overlap
313,384

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Other links

* quick link - http://q.sanger.ac.uk/z30q8y64