ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_22 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-132H22
Drchr22_MHC-I_FPC_ctg2085
zFD132H22
EPN details
FP015962.3
finished
2 CH73-6K16
Drchr22_MHC-I_FPC_ctg2085
zH6K16
EPN details
CT009593.9
finished
3 CH73-315I20
Drchr22_MHC-I_FPC_ctg2085
zH315I20
EPN details
FP085433.3
finished
4 CH73-13N19
Drchr22_MHC-I_FPC_ctg2085
zH13N19
EPN details
FP102166.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 38604 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 FP015962.3 1 38604 +
38605 43604 2 N 5000 No overlap in database    
43605 136788 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CT009593.9 1 93184 +
136789 141788 4 N 5000 No overlap in database    
141789 230714 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 FP085433.3 1 88926 +
230715 235714 6 N 5000 No overlap in database    
235715 305805 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 FP102166.4 1 70091 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-132H22
Drchr22_MHC-I_FPC_ctg2085
zFD132H22
EPN details
Cancelled
22-SEP-09
FP015962.3
finished
38604 CHORI1073        
2 CH73-6K16
Drchr22_MHC-I_FPC_ctg2085
zH6K16
EPN details
Analysed
24-MAR-09
CT009593.9
finished
93184 CHORI-73        
3 CH73-315I20
Drchr22_MHC-I_FPC_ctg2085
zH315I20
EPN details
Cancelled
22-SEP-09
FP085433.3
finished
88926 CHORI-73        
4 CH73-13N19
Drchr22_MHC-I_FPC_ctg2085
zH13N19
EPN details
Analysed
28-MAR-09
FP102166.4
finished
70091 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
290,805
Total finished length of fin clones w/o overlap
290,805
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
290,805
Total finished length of fin+unfin clones w/o overlap
290,805

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Other links

* quick link - http://q.sanger.ac.uk/xxu1s11w