ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-III_21 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-47M16
Drchr21_MHC-III_FPC_ctg2016
zFD47M16
EPN details
FP101878.3
finished
2 CH73-182I17
Drchr21_MHC-III_FPC_ctg2016
zH182I17
EPN details
FP102053.4
finished
3 CH73-287M6
Drchr21_MHC-III_FPC_ctg2016
zH287M6
EPN details
FP102168.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 36922 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP101878.3 1 36922 -
36923 114830 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP102053.4 22094 100001 +
114831 206552 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP102168.5 30630 122351 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-47M16
Drchr21_MHC-III_FPC_ctg2016
zFD47M16
EPN details
Analysed
17-FEB-09
FP101878.3
finished
36922 CHORI1073 5' / 5'
1 / 22094
- / -
22093
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
2 CH73-182I17
Drchr21_MHC-III_FPC_ctg2016
zH182I17
EPN details
Analysed
23-APR-09
FP102053.4
finished
100001 CHORI-73 3' / 5'
100001 / 30630
- / -
30629
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
3 CH73-287M6
Drchr21_MHC-III_FPC_ctg2016
zH287M6
EPN details
Analysed
09-JUL-09
FP102168.5
finished
122351 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
52,722
Total finished length of fin clones w/ overlap
259,274
Total finished length of fin clones w/o overlap
206,552
Total overlap length of fin+unfin clones
52,722
Total finished length of fin+unfin clones w/ overlap
259,274
Total finished length of fin+unfin clones w/o overlap
206,552

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Other links

* quick link - http://q.sanger.ac.uk/b8yiylse